Visualize genelists gene overlap in an interactive UpSet plot

UpSetJS examples: https://upset.js.org/integrations/r/articles/combinationModes.html#distinct-intersection-mode

Usage

plot_genelists_overlap_upsetjs(
  genelists,
  mode = "distinct",
  interactive = FALSE,
  main.color = "black",
  highlight.color = "green"
)

Arguments

genelists

UI value/list of tibbles/dataframes

mode

string, default: 'intersect', else 'distinct' or 'union' - how to overlap the listed genes

interactive

default: FALSE, else TRUE

main.color

default: 'white' else character hexcolor or colorname

highlight.color

default: 'green' else character hexcolor or colorname

Value

upset plot

Examples

plot_genelists_overlap_upsetjs(list(
  A = get(load(system.file("extdata", "example_genelist.rda", package = "goatea"))), 
  B = get(load(system.file("extdata", "example_genelist.rda", package = "goatea")))
))