# Generated by roxygen2: do not edit by hand

export(plot_freq_barplot)
export(plot_ggseqlogo_meme)
export(plot_motif_barplot)
export(plot_size_distribution)
export(run_fRagmentomics)
import(ggplot2)
importFrom(Biostrings,getSeq)
importFrom(GenomeInfoDb,seqnames)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,start)
importFrom(IRanges,IRanges)
importFrom(RColorBrewer,brewer.pal)
importFrom(RColorBrewer,brewer.pal.info)
importFrom(Rsamtools,FaFile)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,bamFlagAsBitMatrix)
importFrom(Rsamtools,indexBam)
importFrom(Rsamtools,indexFa)
importFrom(Rsamtools,scanBam)
importFrom(Rsamtools,scanBamFlag)
importFrom(Rsamtools,scanFaIndex)
importFrom(S4Vectors,DataFrame)
importFrom(VariantAnnotation,alt)
importFrom(VariantAnnotation,readVcf)
importFrom(VariantAnnotation,ref)
importFrom(data.table,rbindlist)
importFrom(dplyr,all_of)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,count)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,group_split)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,pull)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(future,availableCores)
importFrom(future,multisession)
importFrom(future,plan)
importFrom(future,sequential)
importFrom(future.apply,future_lapply)
importFrom(ggh4x,facet_nested)
importFrom(ggplot2,aes)
importFrom(ggplot2,after_stat)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_void)
importFrom(ggseqlogo,ggseqlogo)
importFrom(ggseqlogo,make_col_scheme)
importFrom(grDevices,hcl.colors)
importFrom(grid,unit)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,map_chr)
importFrom(purrr,map_dbl)
importFrom(purrr,map_int)
importFrom(purrr,set_names)
importFrom(readr,read_tsv)
importFrom(rlang,abort)
importFrom(scales,percent_format)
importFrom(scales,pvalue)
importFrom(stats,chisq.test)
importFrom(stats,na.omit)
importFrom(stats,prop.test)
importFrom(stats,setNames)
importFrom(stats,xtabs)
importFrom(stringr,str_count)
importFrom(stringr,str_detect)
importFrom(stringr,str_extract)
importFrom(stringr,str_extract_all)
importFrom(stringr,str_length)
importFrom(stringr,str_match)
importFrom(stringr,str_remove)
importFrom(stringr,str_split)
importFrom(stringr,str_sub)
importFrom(tibble,tibble)
importFrom(tidyr,crossing)
importFrom(tidyr,drop_na)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,separate_rows)
importFrom(utils,modifyList)
importFrom(utils,write.table)
