# Generated by roxygen2: do not edit by hand

export("setNormalizedData<-")
export("setTaxaData<-")
export(CreateCrcBiomeScreenObject)
export(CreateCrcBiomeScreenObjectFromTSE)
export(EvaluateCrcBiomeScreen)
export(EvaluateModel)
export(EvaluateRF)
export(EvaluateXGBoost)
export(FilterDataSet)
export(KeepTaxonomicLevel)
export(LoadTaxaTable)
export(ModelingRF)
export(ModelingRF_noweights)
export(ModelingXGBoost)
export(ModelingXGBoost_noweights)
export(NormalizeData)
export(PredictCrcBiomeScreen)
export(RunScreening)
export(SplitDataSet)
export(SplitTaxas)
export(TrainModels)
export(ValidateModelOnData)
export(checkClassBalance)
export(getAbsoluteAbundance)
export(getModelData)
export(getModelResult)
export(getNormalizedData)
export(getOutlierSamples)
export(getPredictResult)
export(getRelativeAbundance)
export(getSampleData)
export(getTaxaData)
export(getTaxaLevelData)
export(qcByCmdscale)
import(TreeSummarizedExperiment)
import(doFuture)
import(future)
import(future.apply)
import(progress)
import(progressr)
import(stats)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(caret,confusionMatrix)
importFrom(caret,createFolds)
importFrom(caret,train)
importFrom(caret,trainControl)
importFrom(caret,twoClassSummary)
importFrom(doParallel,registerDoParallel)
importFrom(doParallel,stopImplicitCluster)
importFrom(dplyr,across)
importFrom(dplyr,mutate)
importFrom(foreach,"%do%")
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(ggplot2,aes)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,labs)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(graphics,abline)
importFrom(graphics,barplot)
importFrom(magrittr,"%>%")
importFrom(methods,new)
importFrom(methods,validObject)
importFrom(pROC,auc)
importFrom(pROC,ci.auc)
importFrom(pROC,ci.coords)
importFrom(pROC,coords)
importFrom(pROC,plot.roc)
importFrom(pROC,roc)
importFrom(parallel,makePSOCKcluster)
importFrom(ranger,ranger)
importFrom(rlang,sym)
importFrom(tibble,tibble)
importFrom(tidyr,separate)
importFrom(utils,getFromNamespace)
importFrom(withr,with_seed)
