Package: Chicago
Type: Package
Title: CHiCAGO: Capture Hi-C Analysis of Genomic Organization
Version: 1.40.0
Author: Jonathan Cairns, Paula Freire Pritchett, Steven Wingett, Mikhail Spivakov
Maintainer: Mikhail Spivakov <mikhail.spivakov@lms.mrc.ac.uk>
Description: A pipeline for analysing Capture Hi-C data.
License: Artistic-2.0
Depends: R (>= 3.3.1), data.table
Imports: matrixStats, MASS, Hmisc, Delaporte, methods, grDevices,
        graphics, stats, utils
Suggests: argparser, BiocStyle, knitr, rmarkdown, PCHiCdata, testthat,
        GenomeInfoDb, Rsamtools, GenomicInteractions, GenomicRanges,
        IRanges, AnnotationHub
VignetteBuilder: knitr
biocViews: Epigenetics, HiC, Sequencing, Software
git_url: https://git.bioconductor.org/packages/Chicago
git_branch: RELEASE_3_23
git_last_commit: 1d222c9
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: no
Packaged: 2026-04-28 21:12:55 UTC; biocbuild
