scLang
This is the development version of scLang; to use it, please install the devel version of Bioconductor.
A unified language for interacting with Seurat and SingleCellExperiment
Bioconductor version: Development (3.23)
scLang is a suite for package development for scRNA-seq analysis. It offers functions that can operate on both Seurat and SingleCellExperiment objects. These functions are primarily aimed to help developers build tools compatible with both types of input.
Author: Andrei-Florian Stoica [aut, cre]
Maintainer: Andrei-Florian Stoica <andreistoica at foxmail.com>
citation("scLang")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("scLang")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scLang")| scLang | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | GeneExpression, SingleCell, Software, Visualization |
| Version | 0.99.3 |
| In Bioconductor since | BioC 3.23 (R-4.6) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | dplyr, ggplot2, henna, methods, paletteer, rlang, S4Vectors, SeuratObject, SingleCellExperiment, stats, SummarizedExperiment |
| System Requirements | |
| URL | https://github.com/andrei-stoica26/scLang |
| Bug Reports | https://github.com/andrei-stoica26/scLang/issues |
See More
| Suggests | BiocStyle, knitr, qs2, rmarkdown, scater, scRNAseq, Seurat, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | GSABenchmark, hammers |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | scLang_0.99.3.tar.gz |
| Windows Binary (x86_64) | scLang_0.99.3.zip |
| macOS Binary (big-sur-x86_64) | scLang_0.99.3.tgz |
| macOS Binary (big-sur-arm64) | |
| macOS Binary (sonoma-arm64) | scLang_0.99.3.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/scLang |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scLang |
| Bioc Package Browser | https://code.bioconductor.org/browse/scLang/ |
| Package Short Url | https://bioconductor.org/packages/scLang/ |
| Package Downloads Report | Download Stats |