Integrative clustering of multi-type genomic data

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Documentation for package ‘iClusterPlus’ version 1.47.3

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breast.chr17 Breast cancer data set DNA copy number and mRNA expression measure on chromosome 17
clin4 Uveal Melanoma data
cn Uveal Melanoma data
CNregions A function to remove redundant copy number regions
compute.pod A function to compute the proportion of deviation from perfect block diagonal matrix
coord genomic coordinates
gbm GBM data
gbm.exp GBM data
gbm.mut GBM data
gbm.seg GBM data
getBIC Utility functions for iClusterPlus package
getClusters Utility functions for iClusterPlus package
getDevR Utility functions for iClusterPlus package
glp good lattice points using the uniform design
iCluster Integrative clustering of multiple genomic data types
iCluster2 Integrative clustering of multiple genomic data types
iCluster2b Integrative clustering of multi-omics data
iClusterBayes Integrative clustering of multiple genomic data types
iClusterBayes2 Integrative clustering of multi-omics data
iClusterPlus Integrative clustering of multiple genomic data types
iClusterPlus2 Integrative clustering of multi-omics data
iManual Utility functions for iClusterPlus package
methy25 Uveal Melanoma data
methy25Anno Uveal Melanoma data
mrna25 Uveal Melanoma data
mut02 Uveal Melanoma data
pcaVarPlot A function to make PCA variance plot of the combined matrix of multi-omics data matrices.
plotHeatmap A function to generate heatmap panels sorted by integrated cluster assignment.
plotHMBayes A function to generate heatmap panels sorted by integrated cluster assignment.
plotiCluster A function to generate cluster separability matrix plot.
plotRI A function to generate reproducibility index plot.
tune.iCluster2 Integrative clustering of multiple genomic data types
tune.iCluster2b Integrative clustering of multi-omics data
tune.iClusterBayes Integrative clustering of multiple genomic data
tune.iClusterPlus Integrative clustering of multiple genomic data
UM Uveal Melanoma data
variation.hg18.v10.nov.2010 Human genome variants of the NCBI 36 (hg18) assembly