Signature scoring for single cell analysis
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Documentation for package ‘Seqtometry’ version 0.99.3
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| Seqtometry-package | Signature scoring for single cell analysis |
| .apply_diff_op | Perform data diffusion |
| .calc_diff_op | Compute diffusion operator |
| .calc_pca | PCA wrapper |
| .check_params | Parameter validation |
| .gene_indices | Finds row indices of signature genes |
| .invert_pca | PCA inversion |
| .minmax_scale | Minmax transform |
| .normalize | LogCP10K transform |
| .procrustes | Procrustes disparity |
| impute | MAGIC imputation (van Dijk et al. 2018) |
| score | Seqtometry scoring (Kousnetsov et al. 2024) |
| Seqtometry | Signature scoring for single cell analysis |
| wks | Helper function for performing a weighted Kolmogorov-Smirnov-like procedure. |