# Generated by roxygen2: do not edit by hand

export("%>%")
export(checkmatch_pk_to_data)
export(cluster_ora)
export(cluster_pk)
export(compare_pk)
export(count_id)
export(dma)
export(equivalent_id)
export(get_exclusion_metabolites)
export(make_gene_metab_set)
export(mapping_ambiguity)
export(mca_2cond)
export(mca_core)
export(meta_pk)
export(metadata_analysis)
export(metaproviz_config_path)
export(metaproviz_load_config)
export(metaproviz_log)
export(metaproviz_logfile)
export(metaproviz_reset_config)
export(metaproviz_save_config)
export(metaproviz_set_loglevel)
export(metsigdb_chemicalclass)
export(metsigdb_kegg)
export(metsigdb_macdb)
export(metsigdb_metalinks)
export(metsigdb_reactome)
export(metsigdb_wikipathways)
export(pool_estimation)
export(processing)
export(replicate_sum)
export(standard_ora)
export(translate_id)
export(traverse_ids)
export(viz_graph)
export(viz_heatmap)
export(viz_pca)
export(viz_superplot)
export(viz_volcano)
importClassesFrom(methods,data.frame)
importFrom(ComplexUpset,intersection_size)
importFrom(ComplexUpset,upset)
importFrom(ComplexUpset,upset_set_size)
importFrom(DBI,dbDisconnect)
importFrom(DBI,dbGetQuery)
importFrom(DBI,dbListTables)
importFrom(EnhancedVolcano,EnhancedVolcano)
importFrom(OmnipathR,ambiguity)
importFrom(OmnipathR,config_path)
importFrom(OmnipathR,ensembl_organisms)
importFrom(OmnipathR,id_types)
importFrom(OmnipathR,kegg_conv)
importFrom(OmnipathR,kegg_link)
importFrom(OmnipathR,kegg_list)
importFrom(OmnipathR,load_config)
importFrom(OmnipathR,logfile)
importFrom(OmnipathR,macdb_metabolite_cancer_associations)
importFrom(OmnipathR,metalinksdb_sqlite)
importFrom(OmnipathR,oma_organisms)
importFrom(OmnipathR,ramp_id_mapping_table)
importFrom(OmnipathR,ramp_table)
importFrom(OmnipathR,reactome_chebi)
importFrom(OmnipathR,read_log)
importFrom(OmnipathR,reset_config)
importFrom(OmnipathR,save_config)
importFrom(OmnipathR,set_loglevel)
importFrom(OmnipathR,translate_ids)
importFrom(OmnipathR,uniprot_organisms)
importFrom(OmnipathR,wikipathways_metabolites_sparql)
importFrom(Polychrome,palette36.colors)
importFrom(S4Vectors,DataFrame)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(broom,tidy)
importFrom(cosmosR,default_CARNIVAL_options)
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,count)
importFrom(dplyr,cur_group_id)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,first)
importFrom(dplyr,full_join)
importFrom(dplyr,group_by)
importFrom(dplyr,if_else)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_all)
importFrom(dplyr,mutate_at)
importFrom(dplyr,n)
importFrom(dplyr,n_distinct)
importFrom(dplyr,pull)
importFrom(dplyr,relocate)
importFrom(dplyr,rename)
importFrom(dplyr,rename_with)
importFrom(dplyr,row_number)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,select_if)
importFrom(dplyr,summarise)
importFrom(dplyr,summarise_all)
importFrom(dplyr,summarize)
importFrom(dplyr,tibble)
importFrom(dplyr,transmute)
importFrom(dplyr,ungroup)
importFrom(factoextra,fviz_screeplot)
importFrom(ggbeeswarm,geom_beeswarm)
importFrom(ggfortify,fortify_map)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,after_stat)
importFrom(ggplot2,annotate)
importFrom(ggplot2,annotation_custom)
importFrom(ggplot2,autoplot)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,expansion)
importFrom(ggplot2,geom_abline)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_dotplot)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_qq)
importFrom(ggplot2,geom_qq_line)
importFrom(ggplot2,geom_smooth)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplotGrob)
importFrom(ggplot2,ggplot_build)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,margin)
importFrom(ggplot2,position_dodge)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_fill_viridis_d)
importFrom(ggplot2,scale_linetype_discrete)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,stat_summary)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggpubr,get_legend)
importFrom(ggpubr,stat_compare_means)
importFrom(ggpubr,stat_pvalue_manual)
importFrom(ggraph,geom_edge_link)
importFrom(ggraph,geom_node_point)
importFrom(ggraph,geom_node_text)
importFrom(ggraph,ggraph)
importFrom(ggraph,theme_graph)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,chull)
importFrom(grDevices,dev.new)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(grDevices,recordPlot)
importFrom(grDevices,svg)
importFrom(graphics,plot.new)
importFrom(graphics,text)
importFrom(grid,convertUnit)
importFrom(grid,unit)
importFrom(gridExtra,grid.arrange)
importFrom(gtools,foldchange2logratio)
importFrom(hash,hash)
importFrom(hash,keys)
importFrom(hash,values)
importFrom(igraph,cluster_louvain)
importFrom(igraph,components)
importFrom(igraph,degree)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,induced_subgraph)
importFrom(inflection,uik)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,topTable)
importFrom(logger,log_error)
importFrom(logger,log_info)
importFrom(logger,log_trace)
importFrom(logger,log_warn)
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(magrittr,add)
importFrom(magrittr,equals)
importFrom(magrittr,extract)
importFrom(magrittr,extract2)
importFrom(magrittr,is_in)
importFrom(magrittr,multiply_by)
importFrom(magrittr,not)
importFrom(methods,new)
importFrom(patchwork,wrap_plots)
importFrom(pheatmap,pheatmap)
importFrom(purrr,map)
importFrom(purrr,map_chr)
importFrom(purrr,map_dbl)
importFrom(purrr,map_int)
importFrom(purrr,map_lgl)
importFrom(purrr,partial)
importFrom(purrr,pmap)
importFrom(purrr,pmap_chr)
importFrom(purrr,reduce)
importFrom(purrr,set_names)
importFrom(qcc,mqcc)
importFrom(qvalue,qvalue)
importFrom(rappdirs,user_cache_dir)
importFrom(readr,write_csv)
importFrom(readr,write_delim)
importFrom(rlang,"!!!")
importFrom(rlang,"!!")
importFrom(rlang,"%||%")
importFrom(rlang,":=")
importFrom(rlang,.data)
importFrom(rlang,enquo)
importFrom(rlang,exec)
importFrom(rlang,is_symbol)
importFrom(rlang,quo_get_expr)
importFrom(rlang,quo_text)
importFrom(rlang,sym)
importFrom(rlang,syms)
importFrom(rstatix,dunn_test)
importFrom(rstatix,games_howell_test)
importFrom(stats,TukeyHSD)
importFrom(stats,aggregate)
importFrom(stats,aov)
importFrom(stats,as.dist)
importFrom(stats,as.formula)
importFrom(stats,bartlett.test)
importFrom(stats,complete.cases)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,fisher.test)
importFrom(stats,hclust)
importFrom(stats,kruskal.test)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,phyper)
importFrom(stats,prcomp)
importFrom(stats,relevel)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,shapiro.test)
importFrom(stats,var)
importFrom(stringr,str_match)
importFrom(stringr,str_remove)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_split)
importFrom(stringr,str_starts)
importFrom(stringr,str_sub)
importFrom(stringr,str_to_lower)
importFrom(stringr,str_trim)
importFrom(tibble,column_to_rownames)
importFrom(tibble,remove_rownames)
importFrom(tibble,rownames_to_column)
importFrom(tibble,tibble)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,replace_na)
importFrom(tidyr,separate)
importFrom(tidyr,separate_rows)
importFrom(tidyr,unite)
importFrom(tidyr,unnest)
importFrom(tidyselect,all_of)
importFrom(tidyselect,everything)
importFrom(tidyselect,starts_with)
importFrom(tidyselect,where)
importFrom(utils,combn)
importFrom(utils,data)
importFrom(utils,head)
importFrom(utils,packageVersion)
importFrom(writexl,write_xlsx)
