MetaProViz              The MetaProViz package
alanine_pathways        alanine_pathways
biocrates_features      biocrates_features
cellular_meta           cellular_meta
checkmatch_pk_to_data   Check and summarize relationship between prixor
                        knowledge to measured
cluster_ora             Overrepresentation analysis by cluster
cluster_pk              Cluster terms in prior knowledge by set overlap
compare_pk              Compare Prior Knowledge Resources and/or
                        Columns within a Single Resource
count_id                Count Entries and Generate a Histogram Plot for
                        a Specified Column
dma                     Differential metabolite analysis
equivalent_features     equivalent_features
equivalent_id           Find additional potential IDs for "kegg",
                        "pubchem", "chebi", "hmdb"
gaude_pathways          gaude_pathways
get_exclusion_metabolites
                        Metabolites excluded from prior knowledge
                        resources
hallmarks               hallmarks
intracell_dma           intracell_dma
intracell_raw           intracell_raw
intracell_raw_se        intracell_raw_se
make_gene_metab_set     Create metabolite sets from existing genesets
mapping_ambiguity       Create Mapping Ambiguities between two ID types
mca_2cond               Metabolite clustering analysis for two
                        conditions
mca_core                Metabolite clustering analysis for core
                        experiments
mca_core_rules          mca_core_rules
mca_twocond_rules       mca_twocond_rules
medium_raw              medium_raw
meta_pk                 Meta prior-knowledge
metadata_analysis       PCA-based metadata analysis
metaproviz_config_path
                        Current config file path of MetaProViz
metaproviz_load_config
                        Load the package configuration from a config
                        file
metaproviz_log          Browse the current MetaProViz log file
metaproviz_logfile      Path to the current MetaProViz log file
metaproviz_reset_config
                        Restore the built-in default values of all
                        config parameters of MetaProViz
metaproviz_save_config
                        Save the current package configuration
metaproviz_set_loglevel
                        Sets the log level for the package logger
metsigdb_chemicalclass
                        Metabolite chemical classes from RaMP DB
metsigdb_kegg           KEGG pathways
metsigdb_macdb          Retrieve MACDB metabolite-cancer associations.
metsigdb_metalinks      Annotated metabolite-protein interactions from
                        MetalinksDB
metsigdb_reactome       Retrieve Reactome metabolite sets suitable for
                        ORA.
metsigdb_wikipathways   Retrieve WikiPathways metabolite mapping
                        suitable for ORA.
pool_estimation         Find metabolites with high variability across
                        total pool samples
processing              Data preprocessing and normalization
replicate_sum           Merges the analytical replicates of an
                        experiment
standard_ora            Overrepresentation analysis of metabolite sets
                        in pathways
tissue_dma              tissue_dma
tissue_dma_old          tissue_dma_old
tissue_dma_young        tissue_dma_young
tissue_meta             Tissue_Metadata
tissue_norm             tissue_norm
tissue_norm_se          tissue_norm_se
tissue_tvn_proteomics   tissue_tvn_proteomics
tissue_tvn_rnaseq       tissue_tvn_rnaseq
translate_id            Translate IDs to/from KEGG, PubChem, Chebi,
                        HMDB
traverse_ids            Expand metabolite IDs by traversing RaMP ID
                        mappings
viz_graph               Graph visualization for clustered terms
viz_heatmap             Heatmap visualization
viz_pca                 This script allows you to perform PCA plot
                        visualization using the results of the
                        MetaProViz analysis
viz_superplot           This script allows you to perform different
                        visualizations (bar, box, violin plots) using
                        the results of the MetaProViz analysis
viz_volcano             Volcano plot
