API Wrapper for ToppGene
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Documentation for package ‘scToppR’ version 0.99.10
Help Pages
| addToppData | Add toppData results to SingleCellExperiment or SummarizedExperiment metadata |
| addToppData | Add toppData results to SingleCellExperiment or SummarizedExperiment metadata |
| get_Entrez | Convert genes into Entrez format |
| get_ToppCats | Get a vector of ToppFun categories |
| ifnb.de | IFNB DE results |
| ifnb.markers.df | IFNB Marker DF |
| ifnb.markers.list.CD8T | IFNB Marker DF |
| pbmc.markers | PBMC markers |
| toppBalloon | Create a balloon plot from toppdata results |
| toppdata.airway | toppData example using the airway dataset results |
| toppdata.ifnb | toppData example for ifnb.de |
| toppdata.pbmc | toppData example |
| toppFun | Get results from ToppFun |
| toppPlot | Create a dotplot from toppdata results |
| toppSave | Save toppData results (optionally) split by celltype/cluster |