Enhancing Cross-Language Mass Spectrometry Data Analysis with R and Python

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Documentation for package ‘SpectriPy’ version 1.1.8

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS

Help Pages

$-method	A MS data backend for MS data stored in Python
$<--method	A MS data backend for MS data stored in Python
backendInitialize-method	A MS data backend for MS data stored in Python
compareSpectriPy	Spectra similarity calculations using Python's matchms library
compareSpectriPy-method	Spectra similarity calculations using Python's matchms library
conversion	Converting between R and Python MS data structures
CosineGreedy	Spectra similarity calculations using Python's matchms library
CosineHungarian	Spectra similarity calculations using Python's matchms library
defaultSpectraVariableMapping	Converting between R and Python MS data structures
filterSpectriPy	Filter Spectra using Python's matchms library
filterSpectriPy-method	Filter Spectra using Python's matchms library
intensity<--method	A MS data backend for MS data stored in Python
length-method	A MS data backend for MS data stored in Python
ModifiedCosine	Spectra similarity calculations using Python's matchms library
ModifiedCosineGreedy	Spectra similarity calculations using Python's matchms library
ModifiedCosineHungarian	Spectra similarity calculations using Python's matchms library
MsBackendPy	A MS data backend for MS data stored in Python
mz<--method	A MS data backend for MS data stored in Python
NeutralLossesCosine	Spectra similarity calculations using Python's matchms library
normalize_intensities	Filter Spectra using Python's matchms library
peaksData-method	A MS data backend for MS data stored in Python
peaksData<--method	A MS data backend for MS data stored in Python
pyspec_copy_on_replace	Copy Python MS data structure on MS data replacement operations
pyspec_to_rspec	Converting between R and Python MS data structures
reindex	A MS data backend for MS data stored in Python
remove_peaks_around_precursor_mz	Filter Spectra using Python's matchms library
rspec_to_pyspec	Converting between R and Python MS data structures
r_to_py.Spectra	Converting between R and Python MS data structures
select_by_intensity	Filter Spectra using Python's matchms library
select_by_mz	Filter Spectra using Python's matchms library
setBackend-method	A MS data backend for MS data stored in Python
setSpectraVariableMapping	Converting between R and Python MS data structures
spectraData-method	A MS data backend for MS data stored in Python
spectraData<--method	A MS data backend for MS data stored in Python
spectraNames<--method	A MS data backend for MS data stored in Python
spectraVariableMapping-method	A MS data backend for MS data stored in Python
spectraVariableMapping-method	Converting between R and Python MS data structures
spectraVariableMapping<--method	A MS data backend for MS data stored in Python
spectraVariables-method	A MS data backend for MS data stored in Python