Package: BiocBookDemo
Version: 1.8.0
Depends: R (>= 4.3)
Suggests: BiocManager, BiocVersion, BiocStyle, glue, sessioninfo, knitr
License: MIT + file LICENSE
MD5sum: d9eb507f5a3df33753f9091599f53052
NeedsCompilation: no

Package: csawBook
Version: 1.18.0
Depends: BiocFileCache, ChIPpeakAnno, chipseqDBData, csaw, edgeR, Gviz,
        org.Mm.eg.db, rebook, rmarkdown, Rsamtools, rtracklayer,
        TxDb.Mmusculus.UCSC.mm10.knownGene
License: GPL-3
MD5sum: 275afd8b6a427845e3079ee466d33ed6
NeedsCompilation: no

Package: OHCA
Version: 1.5.0
Depends: R (>= 4.4),
Imports: HiCExperiment, HiCool, HiContacts, HiContactsData, DNAZooData,
        fourDNData, plyinteractions, GenomicInteractions, terra, Rfast,
        WGCNA, diffHic, strawr, multiHiCcompare, TopDom, GOTHiC,
        BSgenome.Hsapiens.UCSC.hg38, ggbio, cowplot, patchwork, fs,
        knitr, BiocStyle, sessioninfo
License: MIT + file LICENSE
MD5sum: beb6e632e6d80cf66ef93ce5fb1055f3
NeedsCompilation: no

Package: OSCA
Version: 1.20.0
Depends: BiocStyle, knitr, rebook, rmarkdown
Suggests: OSCA.intro, OSCA.basic, OSCA.advanced, OSCA.workflows,
        OSCA.multisample
License: CC BY 4.0
MD5sum: 1c4c606273676a1aeb8cac0c2c948a6e
NeedsCompilation: no

Package: OSCA.advanced
Version: 1.17.0
Depends: AnnotationHub, batchelor, BiocFileCache, BiocNeighbors,
        BiocParallel, BiocSingular, bluster, clustree, corral, densvis,
        DropletTestFiles, DropletUtils, edgeR, ggbeeswarm, ggplot2,
        gridExtra, igraph, iSEE, limma, msigdbr, mumosa, org.Mm.eg.db,
        PCAtools, pheatmap, rebook, rmarkdown, Rtsne, scater,
        scDblFinder, scPCA, scran, scrapper, scRNAseq (>= 2.17.9),
        scuttle, SingleR, slingshot, snifter, TENxBrainData, tradeSeq,
        TSCAN, velociraptor, viridis
Imports: OSCA.workflows, OSCA.basic, OSCA.multisample
Suggests: rmarkdown, knitr
License: CC BY 4.0
MD5sum: 61567c9af1d15d9da78c44bb98214927
NeedsCompilation: no

Package: OSCA.basic
Version: 1.18.0
Depends: AnnotationHub, apcluster, AUCell, BiocFileCache, BiocSingular,
        bluster, celldex, cluster, dendextend, dynamicTreeCut, GO.db,
        gridExtra, GSEABase, igraph, limma, mbkmeans, org.Mm.eg.db,
        pheatmap, rebook, rmarkdown, RMTstat, robustbase, Rtsne,
        scater, scran, scrapper, scRNAseq, scuttle, SingleR, statmod,
        viridis
Imports: OSCA.workflows
Suggests: rmarkdown, knitr, OSCA.advanced
License: CC BY 4.0
MD5sum: 934affd25346548cef76abb36a8143b9
NeedsCompilation: no

Package: OSCA.intro
Version: 1.18.0
Depends: batchelor, BiocFileCache, BiocManager, bluster,
        DropletTestFiles, DropletUtils, gridExtra, knitr,
        LoomExperiment, R.utils, readxl, rebook, rmarkdown,
        rtracklayer, scater, scran, scRNAseq, scuttle,
        SingleCellExperiment, uwot, zellkonverter
Suggests: BiocManager, rmarkdown, knitr
License: CC BY 4.0
MD5sum: b4f09b0faa655e9e44d9b852022cc784
NeedsCompilation: no

Package: OSCA.multisample
Version: 1.18.0
Depends: batchelor, BiocSingular, bluster, DropletUtils, edgeR,
        gridExtra, igraph, MouseGastrulationData, pheatmap, rebook,
        rmarkdown, Rtsne, scater, scran, scuttle, SingleR,
        TENxPBMCData, TSCAN, uwot, viridis
Imports: OSCA.workflows
Suggests: OSCA.basic, rmarkdown, knitr
MD5sum: 953f781eda9073e0d312f45228878a6e
NeedsCompilation: no

Package: OSCA.workflows
Version: 1.18.0
Depends: AnnotationHub, batchelor, BiocFileCache, BiocNeighbors,
        BiocParallel, BiocSingular, bluster, celldex, cluster,
        DropletTestFiles, DropletUtils, dynamicTreeCut, edgeR,
        EnsDb.Hsapiens.v86, gridExtra, HCAData, igraph, limma,
        org.Hs.eg.db, org.Mm.eg.db, pheatmap, rebook, rmarkdown,
        scater, scPCA, scran, scRNAseq, scuttle, SingleR, viridis
Suggests: BiocManager, rmarkdown, knitr
License: CC BY 4.0
MD5sum: 5959c4c84843f76c824c9b185c1f2b30
NeedsCompilation: no

Package: OSTA
Version: 1.0.0
Depends: R (>= 4.5)
Imports: AUCell, Banksy, basilisk, BayesSpace, BiocFileCache,
        BiocParallel, CARDspa, CCPlotR, DESpace, doMC, dplyr,
        DropletUtils, EBImage, ExperimentHub, GenomeInfoDb, ggfortify,
        ggplot2, ggrepel, ggspavis, harmony, hoodscanR, igraph,
        imcdatasets, imcRtools, jsonlite, lme4, lmerTest, msigdbr,
        muSpaData, nnSVG, openxlsx, osfr, OSTA.data, pals, patchwork,
        pheatmap, RANN, RColorBrewer, reticulate, rtracklayer, scales,
        scater, scider, scran, scuttle, SFEData, SingleR, sosta,
        SpaceTrooper, spacexr, SpatialExperiment, SpatialExperimentIO,
        spatialFDA, SpatialFeatureExperiment, spatialLIBD, spatstat,
        spdep, spicyR, SpotSweeper, STexampleData, Statial, tidyr,
        VisiumIO, Voyager, zellkonverter, zoo
Suggests: BiocManager, BiocPkgTools, BiocStyle, BiocVersion, downlit,
        glue, knitr, markdown, quarto, scrapper, sessioninfo, xml2
License: CC BY 4.0
MD5sum: 711e1158723d7cf7cf4f74fed02c8f4e
NeedsCompilation: no

Package: SingleRBook
Version: 1.20.0
Depends: AnnotationHub, BiocNeighbors, BiocParallel, BiocStyle,
        bluster, celldex, gridExtra, igraph, knitr, ontoProc, pheatmap,
        rebook, rmarkdown, scater, scran, scrapper, scRNAseq, scuttle,
        SingleR, TENxPBMCData, viridis
MD5sum: 6f41a0d6d58cca81ce8b0e6d4d20a26b
NeedsCompilation: no