Changes in version 0.99.5                        

Minor update

  - Add comb_col parameter to plotUpSet() for customizing the color of
    combination matrix elements.

Documentation

  - Update UpSet plot example in the vignette with color customization
    of combination matrix elements using the comb_col parameter.

                       Changes in version 0.99.4                        

New features

  - Add exportOverlapsToBed() function to export genomic overlap groups
    to BED format files.

Documentation

  - Updated vignette to include information about exportOverlapsToBed()
    and guidance on choosing between exportOverlaps() (Excel format) and
    exportOverlapsToBed() (BED format) based on data type and downstream
    needs.

                       Changes in version 0.99.3                        

Minor updates

  - Set default colors in plotVenn().

                       Changes in version 0.99.2                        

New features

  - Add customization options for plotVenn().

Documentation

  - Improved clarity in function documentation and examples.
  - Enhanced vignette with additional customization examples for
    plotVenn().

                       Changes in version 0.99.1                        

Minor updates

  - Package refinements and documentation improvements for Bioconductor
    submission.

                       Changes in version 0.99.0                        

New features

  - Initial release of the gVenn package.
  - Introduced a workflow for overlap analysis:
      - computeOverlaps() computes intersections across multiple sets of
        GRanges or gene lists, returning counts and membership
        categories.
      - extractOverlaps() retrieves the actual elements (regions or
        genes) that belong to each overlap group for downstream
        analysis.
      - exportOverlaps() exports overlap groups to an Excel file,
        creating one sheet per group and converting GRanges to data
        frames when needed.
  - Added visualization functions:
      - plotVenn() to draw proportional Venn diagrams based on overlaps
        between genomic regions (e.g., ChIP-seq peaks).
      - plotUpSet() to visualize complex overlaps with an UpSet plot.
  - Added saveViz() to export visualizations to PDF, PNG, or SVG
    formats, with optional date tagging in filenames.