Package: tximeta
Version: 1.28.0
Title: Transcript Quantification Import with Automatic Metadata
Description: Transcript quantification import from Salmon and other
        quantifiers with automatic attachment of transcript ranges and
        release information, and other associated metadata. De novo
        transcriptomes can be linked to the appropriate sources with
        linkedTxomes and shared for computational reproducibility.
Authors@R: c(
    person("Michael", "Love", email="michaelisaiahlove@gmail.com", role = c("aut","cre")),
    person("Charlotte", "Soneson", role = c("aut","ctb")),
    person("Peter", "Hickey", role = c("aut","ctb")),
    person("Rob", "Patro", role = c("aut","ctb")),
    person("NIH NHGRI", role="fnd"),
    person("CZI", role="fnd")
    )
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
License: GPL-2
VignetteBuilder: knitr, rmarkdown
Depends: R (>= 4.1.0)
Imports: SummarizedExperiment (>= 1.39.1), tximport, jsonlite,
        S4Vectors, IRanges, GenomicRanges (>= 1.61.1), AnnotationDbi,
        GenomicFeatures, txdbmaker, ensembldb, BiocFileCache,
        AnnotationHub, Biostrings, tibble, Seqinfo, tools, utils,
        methods, Matrix
Suggests: knitr, rmarkdown, testthat, tximportData (>= 1.37.5),
        org.Dm.eg.db, DESeq2, edgeR, limma, devtools, macrophage
URL: https://github.com/thelovelab/tximeta
biocViews: Annotation, GenomeAnnotation, DataImport, Preprocessing,
        RNASeq, SingleCell, Transcriptomics, Transcription,
        GeneExpression, FunctionalGenomics, ReproducibleResearch,
        ReportWriting, ImmunoOncology
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Encoding: UTF-8
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:47:16 UTC
RemoteUrl: https://github.com/bioc/tximeta
RemoteRef: RELEASE_3_22
RemoteSha: 4479514b63f679498726792448c0defd4972f76c
NeedsCompilation: no
Packaged: 2025-11-11 18:18:57 UTC; root
Author: Michael Love [aut, cre],
  Charlotte Soneson [aut, ctb],
  Peter Hickey [aut, ctb],
  Rob Patro [aut, ctb],
  NIH NHGRI [fnd],
  CZI [fnd]
Built: R 4.5.2; ; 2025-11-11 18:25:26 UTC; windows
