235f3f5f235d3d3d1a056d2d02054afe *CITATION
4a38d011739919181d62705c42e34786 *DESCRIPTION
54ca7a321643a916c919991786b5110f *INDEX
a67b2bae97e1d6d416f773cb3f897596 *LICENSE
b0d24f9bf4d5baf3341d3f31fbbf7e9a *Meta/Rd.rds
86d0636b4c700e416386835098fcba6f *Meta/features.rds
229145c1ea2491d4d3ff1fb860c66f0e *Meta/hsearch.rds
72ff14b00bf31d120ad62dc7e3d983d9 *Meta/links.rds
2114bd9c4b5c53a76245a40343e766f4 *Meta/nsInfo.rds
2aaecccf87dbec0f9954401a4e2d4a4b *Meta/package.rds
8df40bb9b07780569f0f0e4f46e43a75 *Meta/vignette.rds
92a9c42e8c837bdcec7e5648d961afce *NAMESPACE
ab66dcace749116172cbd2ca24f0e47e *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/lineagespot
14c08dcd81efe2a2dd18d655b69d4048 *R/lineagespot.rdb
e844a693ee95f4509e82da0a9a8234bb *R/lineagespot.rdx
074a2500e3d4dc40a9b4a703035de8f8 *doc/index.html
a93bdc3a9b7f87d8952bea985041176e *doc/lineagespot.R
e8c040fb4a7658ecd5dab9d21dcf8ecc *doc/lineagespot.Rmd
d5d99094984451a1b3bd4be849b85320 *doc/lineagespot.html
f5e0a3774b7342f30933a6a6096b87d8 *extdata/NC_045512.2_annot.gff3
75d5f9e5aa25e8295175be3f01e5c801 *extdata/ref/AY.1.txt
a63320752bc2b7751296b4449f6e97c7 *extdata/ref/AY.2.txt
d4411d1c25b50414e66bc84fa561ad82 *extdata/ref/AY.3.1.txt
9cadcd3d11009852ef56b367f85192c2 *extdata/ref/AY.3.txt
6c30d353b0b6943653fcf8ddd4191f27 *extdata/ref/B.1.1.7+S_E484K.txt
9ea0bb2f409d7477cd4fce4f6961e883 *extdata/ref/B.1.1.7.txt
37988678fe4feeb5615208b395df7761 *extdata/ref/B.1.351.2.txt
bf8aba1c30257ea58a10556a1e990a98 *extdata/ref/B.1.351.3.txt
34a840993d5217bac537fe1d586887ad *extdata/ref/B.1.351.txt
8856c72b91d113b8ba7ae808637c44e3 *extdata/ref/B.1.617.2.txt
baba26946cb2b1592e81f3d031af4ab6 *extdata/ref/P.1.1.txt
09d79737395c6c69482e93cd753ba4ab *extdata/ref/P.1.2.txt
09d79737395c6c69482e93cd753ba4ab *extdata/ref/P.1.txt
55367e21ab319d455b1f86c15f770c6f *extdata/srep-article-code/README.md
7d232ebab2293db3c3157327af2c4bb1 *extdata/vcf-files/SampleA_freebayes_ann.vcf
e99b4f3fc50668b0f4f8ab04eb00d0e3 *extdata/vcf-files/SampleB_freebayes_ann.vcf
71c9b4573e3e3f830fd4f2ff2f0e2b46 *extdata/vcf-files/SampleC_freebayes_ann.vcf
71b6b3785f86d1adfe5dcbc69efc8bf3 *help/AnIndex
3af6429a5589398c319002513fad85a1 *help/aliases.rds
a05713ea10f66184480adf6c3778794e *help/lineagespot.rdb
961cd28910274921639637f581e4c34d *help/lineagespot.rdx
a98f0e8e1cbea1d56a20155b1f58c4ac *help/paths.rds
a073a9a4c17a9134ca0ad11819b5ef9f *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
9c4d7c29f3d4c520b036f6468d6f53d5 *scripts/README.md
c312f2fdbc6e364b727fbed8b26623fb *scripts/raw-data-analysis.md
