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altcdfenvs
alternative CDF environments (aka probeset mappings)
Bioconductor version: 2.7
Convenience data structures and functions to handle cdfenvs
Author: Laurent Gautier <lgautier at gmail.com>
Maintainer: Laurent Gautier <lgautier at gmail.com>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("altcdfenvs")
To cite this package in a publication, start R and enter:
citation("altcdfenvs")
Documentation
| R Script | affy primer | |
| R Script | affy primer | |
| R Script | altcdfenvs | |
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, QualityControl, Preprocessing, Annotation, ProprietaryPlatforms, Transcription |
| Depends | R (>= 2.7), methods, Biobase, affy, makecdfenv, Biostrings, hypergraph |
| Imports | |
| Suggests | plasmodiumanophelescdf, hgu95acdf, hgu133aprobe, hgu133a.db, hgu133acdf, Rgraphviz, RColorBrewer |
| System Requirements | |
| License | GPL (>= 2) |
| URL | |
| Depends On Me | |
| Imports Me | Harshlight |
| Suggests Me | |
| Version | 2.12.0 |
| Since | Bioconductor 1.6 (R-2.1) or earlier |
Package Downloads
| Package Source | altcdfenvs_2.12.0.tar.gz |
| Windows Binary | altcdfenvs_2.12.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | altcdfenvs_2.12.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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