iSeq

Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models

Bioconductor version: Release (2.7)

This package uses Bayesian hidden Ising models to identify IP-enriched genomic regions from ChIP-seq data. It can be used to analyze the ChIP-seq data with or without controls.

Author: Qianxing Mo

Maintainer: Qianxing Mo

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("iSeq")    

Documentation

PDF

R Script

iSeq

Reference Manual

Details

biocViews	ChIP-seq, next generation sequencing, massively parallel sequencing, bioinformatics
Depends	R
Imports
Suggests
System Requirements
License	GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version	1.0.0

Package Downloads

Package Source	iSeq_1.0.0.tar.gz
Windows Binary	iSeq_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	iSeq_1.0.0.tgz
Package Downloads Report	Download Stats