aCGH

Classes and functions for Array Comparative Genomic Hybridization data.

Bioconductor version: Release (2.7)

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Author: Jane Fridlyand, Peter Dimitrov

Maintainer: Peter Dimitrov

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("aCGH")    

Documentation

PDF

R Script

aCGH Overview

Reference Manual

Details

biocViews	CopyNumberVariants, DataImport, Genetics
Depends	R, cluster, survival, multtest
Imports	Biobase, cluster, grDevices, graphics, methods, multtest, stats, survival, splines, utils
Suggests
System Requirements
License	GPL
URL
Depends On Me	ADaCGH2
Imports Me	snapCGH
Suggests Me	beadarraySNP
Version	1.28.0

Package Downloads

Package Source	aCGH_1.28.0.tar.gz
Windows Binary	aCGH_1.28.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	aCGH_1.28.0.tgz
Package Downloads Report	Download Stats