NuPoP

An R package for nucleosome positioning prediction

Bioconductor version: Release (2.7)

NuPoP is an R package for Nucleosome Positioning Prediction.This package is built upon a duration hidden Markov model proposed in Xi et al, 2010; Wang et al, 2008. The core of the package was written in Fotran. In addition to the R package, a stand-alone Fortran software tool is also available at http://nucleosome.stats.northwestern.edu.

Author: Ji-Ping Wang ; Liqun Xi

Maintainer: Ji-Ping Wang

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("NuPoP")    

Documentation

PDF	R Script	An R package for Nucleosome positioning prediction
PDF		NuPoP-manual.pdf

Reference Manual

Details

biocViews	genetics, visualization, classification
Depends
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System Requirements
License	GPL-2
URL
Depends On Me
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Version	1.0.0

Package Downloads

Package Source	NuPoP_1.0.0.tar.gz
Windows Binary	NuPoP_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	NuPoP_1.0.0.tgz
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