MotIV

Motif Identification and Validation

Bioconductor version: Release (2.7)

This package makes use of STAMP for comparing a set of motifs to a given database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs.

Author: Eloi Mercier, Raphael Gottardo

Maintainer: Eloi Mercier , Raphael Gottardo

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("MotIV")    

Documentation

PDF

R Script

The MotIV users guide

Reference Manual

Details

biocViews	Microarray, ChIPchip, ChIPSeq, GenomicSequence
Depends
Imports	graphics, grid, IRanges, lattice, methods, rGADEM, stats, utils
Suggests	rtracklayer
System Requirements
License	GPL 2
URL
Depends On Me
Imports Me
Suggests Me
Version	1.4.0

Package Downloads

Package Source	MotIV_1.4.0.tar.gz
Windows Binary	MotIV_1.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	MotIV_1.4.0.tgz
Package Downloads Report	Download Stats