annotate

Annotation for microarrays

Bioconductor version: Development (2.8)

Using R enviroments for annotation.

Author: R. Gentleman

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("annotate")    

Documentation

PDF	R Script	Annotation Overview
PDF	R Script	Basic GO Usage
PDF	R Script	HowTo: Get HTML Output
PDF	R Script	HowTo: use chromosomal information
PDF	R Script	HOWTO: Use the online query tools
PDF	R Script	Using Affymetrix Probe Level Data
PDF	R Script	Using Data Packages
PDF	R Script	Using the homology package

Reference Manual

Details

biocViews	Annotation, Pathways, GO
Depends	R, AnnotationDbi
Imports	Biobase, AnnotationDbi, DBI, xtable, graphics, utils, stats, methods
Suggests	Biobase, hgu95av2.db, genefilter, Biostrings, rae230a.db, rae230aprobe, tkWidgets, XML, GO.db, org.Hs.eg.db, org.Mm.eg.db, hom.Hs.inp.db
System Requirements
License	Artistic-2.0
URL
Depends On Me	Agi4x44PreProcess, ChromHeatMap, GGtools, GSEABase, GeneAnswers, MLInterfaces, PCpheno, RpsiXML, ScISI, geneplotter, idiogram, macat, ontoTools, phenoTest, safe
Imports Me	Category, ChromHeatMap, GOstats, GSEABase, GeneAnswers, GlobalAncova, ScISI, affycoretools, codelink, genefilter, geneplotter, globaltest, lumi, methylumi, phenoTest, qpgraph, safe, splicegear, tigre
Suggests Me	BiocCaseStudies, GOstats, GSEAlm, GlobalAncova, MLP, biomaRt, geneplotter, globaltest, maigesPack, oneChannelGUI, puma, siggenes, tigre
Version	1.29.3

Package Downloads

Package Source	annotate_1.29.3.tar.gz
Windows Binary	annotate_1.29.3.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	annotate_1.29.3.tgz
Package Downloads Report	Download Stats