ShortRead

Classes and methods for high-throughput short-read sequencing data.

Bioconductor version: Release (2.7)

Base classes, functions, and methods for representation of high-throughput, short-read sequencing data.

Author: Martin Morgan, Michael Lawrence, Simon Anders

Maintainer: Biocore Team c/o BioC user list

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("ShortRead")    

Documentation

PDF	R Script	An introduction to ShortRead
PDF		ShortRead_and_HilbertVis.pdf

Reference Manual

Details

biocViews	DataImport, Sequencing, HighThroughputSequencing, QualityControl
Depends	methods, IRanges, GenomicRanges, Biostrings, lattice, Rsamtools
Imports	IRanges, GenomicRanges, Biostrings, Biobase, hwriter, Rsamtools
Suggests	biomaRt, RUnit
System Requirements
License	Artistic-2.0
URL
Depends On Me	ChIPseqR, DEGseq, OTUbase, Rolexa, chipseq, girafe, segmentSeq
Imports Me	ChIPseqR, ChIPsim, OTUbase, R453Plus1Toolbox, Rolexa, chipseq
Suggests Me	CSAR, Genominator, PICS, R453Plus1Toolbox, Rsamtools
Version	1.8.2

Package Downloads

Package Source	ShortRead_1.8.2.tar.gz
Windows Binary	ShortRead_1.8.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	ShortRead_1.8.2.tgz
Package Downloads Report	Download Stats