ChromHeatMap

Heat map plotting by genome coordinate

Bioconductor version: Release (2.7)

The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.

Author: Tim F. Rayner

Maintainer: Tim F. Rayner

To install this package, start R and enter:

source("http:///biocLite.R")
biocLite("ChromHeatMap")    

Documentation

PDF

R Script

Plotting expression data with ChromHeatMap

Reference Manual

Details

biocViews	Visualization
Depends	R, annotate, AnnotationDbi, hgu95av2.db
Imports	annotate, AnnotationDbi, Biobase, graphics, grDevices, methods, stats, IRanges, rtracklayer
Suggests	ALL
System Requirements
License	Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version	1.4.0

Package Downloads

Package Source	ChromHeatMap_1.4.0.tar.gz
Windows Binary	ChromHeatMap_1.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	ChromHeatMap_1.4.0.tgz
Package Downloads Report	Download Stats