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GIT Logs
This is a list of recent commits to git.bioconductor.org, the devel(development) branch of the Bioconductor GIT repository.
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Package: asuri
Commit: 8b6ed50abbe80dcdd77ca439db44d9aaa108e575
Author: aberral <aberralgonzalez@gmail.com>
Date: 2025-07-09 18:03:05 +0200
Commit message:
Commit: 8b6ed50abbe80dcdd77ca439db44d9aaa108e575
Author: aberral <aberralgonzalez@gmail.com>
Date: 2025-07-09 18:03:05 +0200
Commit message:
mail and note fixes
Package: BiocCheck
Commit: ca3623d11404c2b76d60be3dbd22a08eb1dcc9c7
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-09 12:00:32 -0400
Commit message:
Commit: ca3623d11404c2b76d60be3dbd22a08eb1dcc9c7
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-09 12:00:32 -0400
Commit message:
version bump 1.45.8
Package: BiocCheck
Commit: e1467aff01da23151e3188eac4dfec74be490a89
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-09 12:00:19 -0400
Commit message:
Commit: e1467aff01da23151e3188eac4dfec74be490a89
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-09 12:00:19 -0400
Commit message:
update NEWS
Package: BiocCheck
Commit: 792ac4a1cba071dfe43f2d6f9650893b137fd70d
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-06-23 12:22:37 -0400
Commit message:
Commit: 792ac4a1cba071dfe43f2d6f9650893b137fd70d
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-06-23 12:22:37 -0400
Commit message:
skip class and internal keyword docs
Package: RnBeads
Commit: 512a55553918a57da2cf3b76de28895b223ee665
Author: Michael Scherer <michael.scherer@dkfz.de>
Date: 2025-07-09 19:58:21 +0200
Commit message:
Commit: 512a55553918a57da2cf3b76de28895b223ee665
Author: Michael Scherer <michael.scherer@dkfz.de>
Date: 2025-07-09 19:58:21 +0200
Commit message:
Merge branch 'devel' of git.bioconductor.org:packages/RnBeads
Package: RnBeads
Commit: 2d5ece613b1da19b095047eda2208eb1de6de9c4
Author: Michael Scherer <michael.scherer@dkfz.de>
Date: 2025-07-09 19:56:59 +0200
Commit message:
Commit: 2d5ece613b1da19b095047eda2208eb1de6de9c4
Author: Michael Scherer <michael.scherer@dkfz.de>
Date: 2025-07-09 19:56:59 +0200
Commit message:
Small fix for reporting SNP probes EPICv1 vs EPICv2
Package: RnBeads
Commit: c46dc3b65edea865d3785d11b6024958269cda74
Author: Scherer <m261r@b370-worker01.dkfz-heidelberg.de>
Date: 2025-05-28 15:37:29 +0200
Commit message:
Commit: c46dc3b65edea865d3785d11b6024958269cda74
Author: Scherer <m261r@b370-worker01.dkfz-heidelberg.de>
Date: 2025-05-28 15:37:29 +0200
Commit message:
Added reshape to Depends
Package: asuri
Commit: 5163d574d572a628e152d08a1999db2391bf37d0
Author: aberral <aberralgonzalez@gmail.com>
Date: 2025-07-09 17:46:37 +0200
Commit message:
Commit: 5163d574d572a628e152d08a1999db2391bf37d0
Author: aberral <aberralgonzalez@gmail.com>
Date: 2025-07-09 17:46:37 +0200
Commit message:
version bump
Package: asuri
Commit: acfa1e8674bb97af0ede1ac4729e6ccff281a3db
Author: aberral <aberralgonzalez@gmail.com>
Date: 2025-07-09 17:46:15 +0200
Commit message:
Commit: acfa1e8674bb97af0ede1ac4729e6ccff281a3db
Author: aberral <aberralgonzalez@gmail.com>
Date: 2025-07-09 17:46:15 +0200
Commit message:
final fixes for reduced time - examples fixed with rda - simplified vignette - added rd doc for new rda files
Package: rawrr
Commit: 004a953fcfd4a3d064de51f7a2846e291b4488ac
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2025-07-09 14:48:53 +0200
Commit message:
Commit: 004a953fcfd4a3d064de51f7a2846e291b4488ac
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2025-07-09 14:48:53 +0200
Commit message:
roxygen2::roxygenize() cosmetics
Package: rawrr
Commit: af17adeec182f9aa3ba2f8ff33b1a4d8a801b29c
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2025-07-09 14:41:49 +0200
Commit message:
Commit: af17adeec182f9aa3ba2f8ff33b1a4d8a801b29c
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2025-07-09 14:41:49 +0200
Commit message:
#92 pass stderr and stdout to system2 call
Package: CENTREprecomputed
Commit: 036ab444f79e6b5c8225cf8401688f8203102cc0
Author: saral98 <sarl98@mi.fu-berlin.de>
Date: 2025-07-09 13:24:06 +0200
Commit message:
Commit: 036ab444f79e6b5c8225cf8401688f8203102cc0
Author: saral98 <sarl98@mi.fu-berlin.de>
Date: 2025-07-09 13:24:06 +0200
Commit message:
bump up version 0.99.1
Package: CENTREprecomputed
Commit: 97ad349e6d7ecbc53b07f13fdc1bfeba8f3981f3
Author: saral98 <sarl98@mi.fu-berlin.de>
Date: 2025-07-09 13:22:33 +0200
Commit message:
Commit: 97ad349e6d7ecbc53b07f13fdc1bfeba8f3981f3
Author: saral98 <sarl98@mi.fu-berlin.de>
Date: 2025-07-09 13:22:33 +0200
Commit message:
bump down version
Package: CENTREprecomputed
Commit: 4e986966ca7fdbfb138a6abf95901c7aee3ae2e8
Author: saral98 <sarl98@mi.fu-berlin.de>
Date: 2025-07-09 13:11:54 +0200
Commit message:
Commit: 4e986966ca7fdbfb138a6abf95901c7aee3ae2e8
Author: saral98 <sarl98@mi.fu-berlin.de>
Date: 2025-07-09 13:11:54 +0200
Commit message:
bump up to version 0.99.1
Package: CENTREprecomputed
Commit: ea3a9a47ccba2ffd1a6c0e23a6f26beb30eac360
Author: saral98 <sarl98@mi.fu-berlin.de>
Date: 2025-07-08 17:54:17 +0200
Commit message:
Commit: ea3a9a47ccba2ffd1a6c0e23a6f26beb30eac360
Author: saral98 <sarl98@mi.fu-berlin.de>
Date: 2025-07-08 17:54:17 +0200
Commit message:
make package buildable on bioc-submission
Package: scafari
Commit: 3386fb64084f99a7f3fe40f0c0433c6bdb8c3f92
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 13:11:58 +0200
Commit message:
Commit: 3386fb64084f99a7f3fe40f0c0433c6bdb8c3f92
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 13:11:58 +0200
Commit message:
raise version
Package: scafari
Commit: 8d3bd1b85a9011c86258475fc662c44cc5a4121d
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 13:08:35 +0200
Commit message:
Commit: 8d3bd1b85a9011c86258475fc662c44cc5a4121d
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 13:08:35 +0200
Commit message:
update test
Package: asuri
Commit: 903c6c9d157c855d23a28ac972c5504b3eba6c69
Author: aberral <aberralgonzalez@gmail.com>
Date: 2025-07-09 11:55:22 +0200
Commit message:
Commit: 903c6c9d157c855d23a28ac972c5504b3eba6c69
Author: aberral <aberralgonzalez@gmail.com>
Date: 2025-07-09 11:55:22 +0200
Commit message:
reduced time fix
Package: asuri
Commit: ded3a75aafd1fa3cb0a1a1dc0b61db167e0c7914
Author: aberral <aberralgonzalez@gmail.com>
Date: 2025-07-08 13:09:02 +0200
Commit message:
Commit: ded3a75aafd1fa3cb0a1a1dc0b61db167e0c7914
Author: aberral <aberralgonzalez@gmail.com>
Date: 2025-07-08 13:09:02 +0200
Commit message:
Fix to reduce RCMD build time
Package: SpectriPy
Commit: c9c77abf8083c2627655808f61148d0fb646d560
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-09 11:51:15 +0200
Commit message:
Commit: c9c77abf8083c2627655808f61148d0fb646d560
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-09 11:51:15 +0200
Commit message:
fix: update NAMESPACE
Package: DuplexDiscovereR
Commit: 5376917aa56f973aef251d477b98d8740268d0dd
Author: Egors01 <yegor.smb@gmail.com>
Date: 2025-07-09 11:38:06 +0200
Commit message:
Commit: 5376917aa56f973aef251d477b98d8740268d0dd
Author: Egors01 <yegor.smb@gmail.com>
Date: 2025-07-09 11:38:06 +0200
Commit message:
Merge branch 'bioc_devel'
Package: DuplexDiscovereR
Commit: d6efb448f8eff1658437c1885409f1eb61d8c3da
Author: Egors01 <yegor.smb@gmail.com>
Date: 2025-07-09 11:30:39 +0200
Commit message:
Commit: d6efb448f8eff1658437c1885409f1eb61d8c3da
Author: Egors01 <yegor.smb@gmail.com>
Date: 2025-07-09 11:30:39 +0200
Commit message:
update NEWS.md
Package: DuplexDiscovereR
Commit: 48a1fa78bb059a02d5ce342f4cda1761589fd5b1
Author: Egors01 <yegor.smb@gmail.com>
Date: 2025-07-09 11:08:19 +0200
Commit message:
Commit: 48a1fa78bb059a02d5ce342f4cda1761589fd5b1
Author: Egors01 <yegor.smb@gmail.com>
Date: 2025-07-09 11:08:19 +0200
Commit message:
merge current dev into bioc_dev
Package: DuplexDiscovereR
Commit: 1247af914a974361b9c6dfdff7fc7f3966f2941a
Author: Egors01 <yegor.smb@gmail.com>
Date: 2025-07-09 10:47:47 +0200
Commit message:
Commit: 1247af914a974361b9c6dfdff7fc7f3966f2941a
Author: Egors01 <yegor.smb@gmail.com>
Date: 2025-07-09 10:47:47 +0200
Commit message:
version update according to the current bioconductor versioning
Package: DuplexDiscovereR
Commit: 4771b137809c3f373f9f5f75996e6e4b2a54df58
Author: EgorS <egorsemenchenko@gmail.com>
Date: 2025-07-04 11:57:20 +0200
Commit message:
Commit: 4771b137809c3f373f9f5f75996e6e4b2a54df58
Author: EgorS <egorsemenchenko@gmail.com>
Date: 2025-07-04 11:57:20 +0200
Commit message:
NEWS and version update
Package: DuplexDiscovereR
Commit: af80b0db553b0baff8fb28790cdaef3e29a2e51b
Author: Egors01 <38434635+Egors01@users.noreply.github.com>
Date: 2025-07-04 11:52:10 +0200
Commit message:
Commit: af80b0db553b0baff8fb28790cdaef3e29a2e51b
Author: Egors01 <38434635+Egors01@users.noreply.github.com>
Date: 2025-07-04 11:52:10 +0200
Commit message:
Merge pull request #14 from Egors01/dev Dev
Package: DuplexDiscovereR
Commit: 06a077a8c6c5fc51a5bc67131868c8566c017694
Author: EgorS <egorsemenchenko@gmail.com>
Date: 2025-07-04 11:39:19 +0200
Commit message:
Commit: 06a077a8c6c5fc51a5bc67131868c8566c017694
Author: EgorS <egorsemenchenko@gmail.com>
Date: 2025-07-04 11:39:19 +0200
Commit message:
added anno_gr_keys argument passing for feature annotation when whole pipeline is executed
Package: DuplexDiscovereR
Commit: bf4d786c3d4d561aac000abd109b408c6ba15f6c
Author: Egors01 <egors01@yandex.ru>
Date: 2025-06-19 12:17:42 +0200
Commit message:
Commit: bf4d786c3d4d561aac000abd109b408c6ba15f6c
Author: Egors01 <egors01@yandex.ru>
Date: 2025-06-19 12:17:42 +0200
Commit message:
added option to skip pvalue calculation
Package: DuplexDiscovereR
Commit: 162c89c07e3d1759174327ee0fa99d58ba1396bc
Author: Egors01 <egors01@yandex.ru>
Date: 2025-05-27 16:28:27 +0200
Commit message:
Commit: 162c89c07e3d1759174327ee0fa99d58ba1396bc
Author: Egors01 <egors01@yandex.ru>
Date: 2025-05-27 16:28:27 +0200
Commit message:
fixed some stuff after merge: 1) arg min_len 2) too high node threshold for the collapse similar
Package: DuplexDiscovereR
Commit: 78e760b0d8fdaed1e5c0ba344183b7e90ec6a654
Author: Egors01 <egors01@yandex.ru>
Date: 2025-05-27 15:41:28 +0200
Commit message:
Commit: 78e760b0d8fdaed1e5c0ba344183b7e90ec6a654
Author: Egors01 <egors01@yandex.ru>
Date: 2025-05-27 15:41:28 +0200
Commit message:
Merge remote-tracking branch 'origin/bioc_currect' into feature/trimming
Package: DuplexDiscovereR
Commit: 47f270183c53e794123bbb28a82a908fb30d09f1
Author: Semenchenko <esemenc@cl-meyer16.mdc-berlin.net>
Date: 2025-01-07 10:29:07 +0100
Commit message:
Commit: 47f270183c53e794123bbb28a82a908fb30d09f1
Author: Semenchenko <esemenc@cl-meyer16.mdc-berlin.net>
Date: 2025-01-07 10:29:07 +0100
Commit message:
local old version for paper
Package: DuplexDiscovereR
Commit: 42f0c1a4521468ada92d44c59222e51ef11db47f
Author: EgorS <Egor.Semenchenko@mdc-berlin.de>
Date: 2024-08-13 16:53:35 +0200
Commit message:
Commit: 42f0c1a4521468ada92d44c59222e51ef11db47f
Author: EgorS <Egor.Semenchenko@mdc-berlin.de>
Date: 2024-08-13 16:53:35 +0200
Commit message:
sj feature added
Package: DuplexDiscovereR
Commit: 3f860bb62cf8aa8e972b2b1dc696bbc77f031f36
Author: EgorS <Egor.Semenchenko@mdc-berlin.de>
Date: 2024-06-13 11:20:00 +0200
Commit message:
Commit: 3f860bb62cf8aa8e972b2b1dc696bbc77f031f36
Author: EgorS <Egor.Semenchenko@mdc-berlin.de>
Date: 2024-06-13 11:20:00 +0200
Commit message:
splicejnc strict added
Package: scafari
Commit: a0fed5bb13fbcb4fe264a807f805213637325941
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 11:37:56 +0200
Commit message:
Commit: a0fed5bb13fbcb4fe264a807f805213637325941
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 11:37:56 +0200
Commit message:
raise version
Package: scafari
Commit: 12c5a4daef09dfa48fdd2a2b83323c7c6b451d34
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 11:36:48 +0200
Commit message:
Commit: 12c5a4daef09dfa48fdd2a2b83323c7c6b451d34
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 11:36:48 +0200
Commit message:
version issue
Package: scafari
Commit: 609606bec25ce605602e6aa3a0ac8226e0ddf1d7
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 11:22:55 +0200
Commit message:
Commit: 609606bec25ce605602e6aa3a0ac8226e0ddf1d7
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 11:22:55 +0200
Commit message:
update man pages
Package: scafari
Commit: 9d5318a03b84d66767eb57662dff62493315933d
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 11:22:32 +0200
Commit message:
Commit: 9d5318a03b84d66767eb57662dff62493315933d
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 11:22:32 +0200
Commit message:
update man pages
Package: multistateQTL
Commit: 15228988dc34349f6e1bfc7628543ef10f08a64a
Author: dunstone-a <amelia.dunstone@gmail.com>
Date: 2025-07-09 19:29:40 +1000
Commit message:
Commit: 15228988dc34349f6e1bfc7628543ef10f08a64a
Author: dunstone-a <amelia.dunstone@gmail.com>
Date: 2025-07-09 19:29:40 +1000
Commit message:
Move data.table to 'Imports'
Package: scafari
Commit: 9cbce3c15e9dd5fc94ae30e7bf25b0c92604fdce
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 10:54:20 +0200
Commit message:
Commit: 9cbce3c15e9dd5fc94ae30e7bf25b0c92604fdce
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 10:54:20 +0200
Commit message:
raise version to 6
Package: scafari
Commit: 304e94952a9be56a47a094ae08dff9a592072bfb
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 10:32:02 +0200
Commit message:
Commit: 304e94952a9be56a47a094ae08dff9a592072bfb
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 10:32:02 +0200
Commit message:
raise version
Package: scafari
Commit: 863de9446f98114ce8721ef82447ad5d3f0d9b2a
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 10:28:27 +0200
Commit message:
Commit: 863de9446f98114ce8721ef82447ad5d3f0d9b2a
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 10:28:27 +0200
Commit message:
only add line
Package: scafari
Commit: d8e6bbcad79274fc6246d8530f453b795dfa98c7
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 10:28:12 +0200
Commit message:
Commit: d8e6bbcad79274fc6246d8530f453b795dfa98c7
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 10:28:12 +0200
Commit message:
update norm test
Package: scafari
Commit: 3c6350c1b9c1b374fdb51b07434a64e490842554
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 10:03:50 +0200
Commit message:
Commit: 3c6350c1b9c1b374fdb51b07434a64e490842554
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 10:03:50 +0200
Commit message:
fix normalizeRC test
Package: SpectriPy
Commit: 47ba84d1b54422ad55ee651eb357cd1909b2d73a
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-09 09:33:13 +0200
Commit message:
Commit: 47ba84d1b54422ad55ee651eb357cd1909b2d73a
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-09 09:33:13 +0200
Commit message:
fix: add tryCatch to Python loading to print config
Package: SpectriPy
Commit: 8dfc12ebb309b63763bb8bfd4d89c739bb02452d
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-09 09:21:05 +0200
Commit message:
Commit: 8dfc12ebb309b63763bb8bfd4d89c739bb02452d
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-09 09:21:05 +0200
Commit message:
refactor: replace msdata by MsDataHub
Package: scafari
Commit: e4f478f3b016967ce31f9dec4faf3949342035b1
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 09:14:21 +0200
Commit message:
Commit: e4f478f3b016967ce31f9dec4faf3949342035b1
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 09:14:21 +0200
Commit message:
raise version
Package: scafari
Commit: 962d24c9ce8b3d6161ef733c5f32552a4a304e34
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 08:50:17 +0200
Commit message:
Commit: 962d24c9ce8b3d6161ef733c5f32552a4a304e34
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 08:50:17 +0200
Commit message:
rm one of the double depends
Package: scafari
Commit: 4a7a4488a2983e47d7bd98f2d4609530bc9c46f9
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 08:49:51 +0200
Commit message:
Commit: 4a7a4488a2983e47d7bd98f2d4609530bc9c46f9
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 08:49:51 +0200
Commit message:
rm one of the double R depends Merge remote-tracking branch 'upstream/devel' # Bitte geben Sie eine Commit-Beschreibung ein, um zu erklären, warum dieser # Merge erforderlich ist, insbesondere wenn es einen aktualisierten # Upstream-Branch mit einem Thema-Branch zusammenführt. # # Zeilen, die mit '#' beginnen, werden ignoriert, # und eine leere Beschreibung bricht den Commit ab.
Package: scafari
Commit: 406bc53fd8ca1f29b9d584f2a462ad83a12bbd37
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 08:34:14 +0200
Commit message:
Commit: 406bc53fd8ca1f29b9d584f2a462ad83a12bbd37
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 08:34:14 +0200
Commit message:
add more tests
Package: scafari
Commit: 4a8bf286f52bb474f86aa0b28abe576f7e5aec2e
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 08:33:56 +0200
Commit message:
Commit: 4a8bf286f52bb474f86aa0b28abe576f7e5aec2e
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 08:33:56 +0200
Commit message:
add testdata and data acquisition description
Package: scafari
Commit: ded9f66a8705c2e41501d564d905576b011d5442
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 08:33:10 +0200
Commit message:
Commit: ded9f66a8705c2e41501d564d905576b011d5442
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 08:33:10 +0200
Commit message:
add _PACKAGE
Package: scafari
Commit: daf0926fb4804db507cb1d393f729922382b3212
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 08:31:06 +0200
Commit message:
Commit: daf0926fb4804db507cb1d393f729922382b3212
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 08:31:06 +0200
Commit message:
biocstyle vignette with correct indent
Package: scafari
Commit: f582e5562942970c5313140eb0d3fdfedc41aba6
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 08:30:36 +0200
Commit message:
Commit: f582e5562942970c5313140eb0d3fdfedc41aba6
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 08:30:36 +0200
Commit message:
paste in stop error handling
Package: scafari
Commit: 8fc089f88710c4e6f70b5f06e3877f809960eae6
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 08:29:34 +0200
Commit message:
Commit: 8fc089f88710c4e6f70b5f06e3877f809960eae6
Author: swind <swind@uni-muenster.de>
Date: 2025-07-09 08:29:34 +0200
Commit message:
version to 3, change to Bioc install
Package: scafari
Commit: da8d59ddb6b7882062eb7e0a62fd05920527d5a9
Author: swind <swind@uni-muenster.de>
Date: 2025-07-08 16:41:53 +0200
Commit message:
Commit: da8d59ddb6b7882062eb7e0a62fd05920527d5a9
Author: swind <swind@uni-muenster.de>
Date: 2025-07-08 16:41:53 +0200
Commit message:
fix line breaks, error handling and add files for testing
Package: scafari
Commit: 342614a885906bc4fed9bc79e3c09c7c6f329859
Author: swind <swind@uni-muenster.de>
Date: 2025-07-08 16:39:48 +0200
Commit message:
Commit: 342614a885906bc4fed9bc79e3c09c7c6f329859
Author: swind <swind@uni-muenster.de>
Date: 2025-07-08 16:39:48 +0200
Commit message:
fix line breaks and error handling
Package: scafari
Commit: adde3cc35277faa610b36c985bbb95daea9c5d72
Author: swind <swind@uni-muenster.de>
Date: 2025-07-08 16:39:08 +0200
Commit message:
Commit: adde3cc35277faa610b36c985bbb95daea9c5d72
Author: swind <swind@uni-muenster.de>
Date: 2025-07-08 16:39:08 +0200
Commit message:
add content
Package: scafari
Commit: 14f328ac8c766b14bb815e2308247c8dfaa75512
Author: swind <swind@uni-muenster.de>
Date: 2025-07-08 16:38:51 +0200
Commit message:
Commit: 14f328ac8c766b14bb815e2308247c8dfaa75512
Author: swind <swind@uni-muenster.de>
Date: 2025-07-08 16:38:51 +0200
Commit message:
reformat, remove hidden fct from export
Package: scafari
Commit: bf82fa104a41e5c2fbf908bd120a3a7463fbacf1
Author: swind <swind@uni-muenster.de>
Date: 2025-07-07 10:23:21 +0200
Commit message:
Commit: bf82fa104a41e5c2fbf908bd120a3a7463fbacf1
Author: swind <swind@uni-muenster.de>
Date: 2025-07-07 10:23:21 +0200
Commit message:
document data acquisition
Package: scafari
Commit: 81fa89ee5098fa833c53218ad2ca5510f9464264
Author: swind <swind@uni-muenster.de>
Date: 2025-07-07 09:10:28 +0200
Commit message:
Commit: 81fa89ee5098fa833c53218ad2ca5510f9464264
Author: swind <swind@uni-muenster.de>
Date: 2025-07-07 09:10:28 +0200
Commit message:
fix typo
Package: scafari
Commit: ffa1301a5407b3d4a57ca0821ec1c9fcf0112eb9
Author: swind <swind@uni-muenster.de>
Date: 2025-07-06 20:08:08 +0200
Commit message:
Commit: ffa1301a5407b3d4a57ca0821ec1c9fcf0112eb9
Author: swind <swind@uni-muenster.de>
Date: 2025-07-06 20:08:08 +0200
Commit message:
fix = assignements and 1:2 to seq
Package: scafari
Commit: 31bb3f52430800aa655b0220fb930746ea3f2b4c
Author: swind <swind@uni-muenster.de>
Date: 2025-07-06 19:55:13 +0200
Commit message:
Commit: 31bb3f52430800aa655b0220fb930746ea3f2b4c
Author: swind <swind@uni-muenster.de>
Date: 2025-07-06 19:55:13 +0200
Commit message:
rm print
Package: scafari
Commit: 14f3a1a59bdb6e391ea282c534d84011dfe554e6
Author: swind <swind@uni-muenster.de>
Date: 2025-07-06 19:53:53 +0200
Commit message:
Commit: 14f3a1a59bdb6e391ea282c534d84011dfe554e6
Author: swind <swind@uni-muenster.de>
Date: 2025-07-06 19:53:53 +0200
Commit message:
rm print
Package: splatter
Commit: 230eec3d0d6d16f94df77b280fe70ac9714a7ed5
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-07-08 21:04:15 +0200
Commit message:
Commit: 230eec3d0d6d16f94df77b280fe70ac9714a7ed5
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-07-08 21:04:15 +0200
Commit message:
Update NEWS and bump version
Package: splatter
Commit: c49f484751f995bf771c7d1c15eccbf7fb7eea76
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-07-08 21:02:03 +0200
Commit message:
Commit: c49f484751f995bf771c7d1c15eccbf7fb7eea76
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-07-08 21:02:03 +0200
Commit message:
Fix documentation links
Package: splatter
Commit: ad02e55c6e5069a75a7113b92fcc0e01f1bff380
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-07-08 21:01:01 +0200
Commit message:
Commit: ad02e55c6e5069a75a7113b92fcc0e01f1bff380
Author: Luke Zappia <lazappi@users.noreply.github.com>
Date: 2025-07-08 21:01:01 +0200
Commit message:
Fix inst/NEWS.Rd formatting
Package: cellxgenedp
Commit: fc61bdfe7a67844b6c89354d924affa3ab1006a7
Author: Martin Morgan <mtmorgan.xyz@gmail.com>
Date: 2025-07-08 13:23:02 -0400
Commit message:
Commit: fc61bdfe7a67844b6c89354d924affa3ab1006a7
Author: Martin Morgan <mtmorgan.xyz@gmail.com>
Date: 2025-07-08 13:23:02 -0400
Commit message:
do not unlist 'facet' columns when constructing tibbles - fixes bug introduced when all 'organism' dataset entries have a single organism
Package: immunogenViewer
Commit: 3a07d7924aa724538e22f167797fac802fac9cba
Author: Waury <kwy700@login3.cm.cluster>
Date: 2025-07-08 18:40:11 +0200
Commit message:
Commit: 3a07d7924aa724538e22f167797fac802fac9cba
Author: Waury <kwy700@login3.cm.cluster>
Date: 2025-07-08 18:40:11 +0200
Commit message:
Version bump
Package: immunogenViewer
Commit: 0a814794bdea5f5a1b5b67eee712859ab59b4053
Author: Waury <kwy700@login3.cm.cluster>
Date: 2025-07-08 18:21:18 +0200
Commit message:
Commit: 0a814794bdea5f5a1b5b67eee712859ab59b4053
Author: Waury <kwy700@login3.cm.cluster>
Date: 2025-07-08 18:21:18 +0200
Commit message:
Merge remote-tracking branch 'origin/main' into devel
Package: immunogenViewer
Commit: 039fd544301dcaf89cf7f3fcc2e8f68a0ea3317c
Author: Katharina Waury <47524923+kathiwaury@users.noreply.github.com>
Date: 2025-07-08 18:13:54 +0200
Commit message:
Commit: 039fd544301dcaf89cf7f3fcc2e8f68a0ea3317c
Author: Katharina Waury <47524923+kathiwaury@users.noreply.github.com>
Date: 2025-07-08 18:13:54 +0200
Commit message:
Removed PredictProtein features
Package: BiocBaseUtils
Commit: f61c0e1d9ad6e6336ae248a6d4e92d93e7f9a8da
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-08 11:36:10 -0400
Commit message:
Commit: f61c0e1d9ad6e6336ae248a6d4e92d93e7f9a8da
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-08 11:36:10 -0400
Commit message:
update NEWS.md
Package: BiocBaseUtils
Commit: 0cc24a13cf27bc376000926f0b55642b7b9a7e63
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-08 11:31:24 -0400
Commit message:
Commit: 0cc24a13cf27bc376000926f0b55642b7b9a7e63
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-08 11:31:24 -0400
Commit message:
version bump 1.11.1
Package: BiocBaseUtils
Commit: c8ad63cff998e7a3d02e4b4758ee6b7a2e6be9e7
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-08 11:31:14 -0400
Commit message:
Commit: c8ad63cff998e7a3d02e4b4758ee6b7a2e6be9e7
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-08 11:31:14 -0400
Commit message:
add pkgs to error output in checkInstalled
Package: BiocBaseUtils
Commit: 40693d5d27eb365286d9f50feda7956b669ecc2e
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-08 11:30:58 -0400
Commit message:
Commit: 40693d5d27eb365286d9f50feda7956b669ecc2e
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-08 11:30:58 -0400
Commit message:
update lifeCycle examples
Package: ChemmineOB
Commit: 41a61277ee6bea2584f3df6c785f1e32e2a6cb18
Author: khoran <khoran@cs.ucr.edu>
Date: 2025-07-08 08:20:54 -0700
Commit message:
Commit: 41a61277ee6bea2584f3df6c785f1e32e2a6cb18
Author: khoran <khoran@cs.ucr.edu>
Date: 2025-07-08 08:20:54 -0700
Commit message:
re-add dependance for zlibbioc to windows build, as it seems to not build otherwise
Package: rawrr
Commit: 02c1b11bdf773ae71b30dc1953cdb60013e6b478
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2025-07-08 15:09:38 +0200
Commit message:
Commit: 02c1b11bdf773ae71b30dc1953cdb60013e6b478
Author: Christian Panse <cp@fgcz.ethz.ch>
Date: 2025-07-08 15:09:38 +0200
Commit message:
#92 add stdout and stderr to system2
Package: proActiv
Commit: b882c5c43273946decd313369bfeb640f46b4f81
Author: jleechung <joseph.lee@u.nus.edu>
Date: 2025-07-08 13:57:57 +0100
Commit message:
Commit: b882c5c43273946decd313369bfeb640f46b4f81
Author: jleechung <joseph.lee@u.nus.edu>
Date: 2025-07-08 13:57:57 +0100
Commit message:
Update annotation seqinfo class with GenomeInfoDb
Package: proActiv
Commit: f5afd3ddf0430b7090469b6899e89a9b68adcf6c
Author: jleechung <joseph.lee@u.nus.edu>
Date: 2025-07-08 13:15:42 +0100
Commit message:
Commit: f5afd3ddf0430b7090469b6899e89a9b68adcf6c
Author: jleechung <joseph.lee@u.nus.edu>
Date: 2025-07-08 13:15:42 +0100
Commit message:
Merge remote-tracking branch 'upstream/devel' into devel
Package: proActiv
Commit: 11623e558b9a799d63da1da5d4ed0fe9917d6ae4
Author: Joseph Lee <joseph.lee@u.nus.edu>
Date: 2022-01-24 16:17:35 +0800
Commit message:
Commit: 11623e558b9a799d63da1da5d4ed0fe9917d6ae4
Author: Joseph Lee <joseph.lee@u.nus.edu>
Date: 2022-01-24 16:17:35 +0800
Commit message:
Merge pull request #37 from lu000016/master fix a typo in doc
Package: proActiv
Commit: 14ba4142e202f0749830e872cb41f5c8fe2791e0
Author: Xiaotong Lu <lu000016@hi129-060.hi.umn.edu>
Date: 2022-01-20 19:38:13 -0600
Commit message:
Commit: 14ba4142e202f0749830e872cb41f5c8fe2791e0
Author: Xiaotong Lu <lu000016@hi129-060.hi.umn.edu>
Date: 2022-01-20 19:38:13 -0600
Commit message:
fix a typo in doc error is found in (### Creating a Promoter Annotation object) "annotation" -> "annotations"
Package: ProteinGymR
Commit: 9d2cbe1ea1cf12c686855461d5ecf39fd3e7b769
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-07-08 12:10:37 +0000
Commit message:
Commit: 9d2cbe1ea1cf12c686855461d5ecf39fd3e7b769
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-07-08 12:10:37 +0000
Commit message:
bumped version
Package: ProteinGymR
Commit: dfb6cd7aaff886c1fea7620ebcac3b243aa62e0c
Author: Tram Nguyen <tram_nguyen@hms.harvard.edu>
Date: 2025-07-08 08:07:15 -0400
Commit message:
Commit: dfb6cd7aaff886c1fea7620ebcac3b243aa62e0c
Author: Tram Nguyen <tram_nguyen@hms.harvard.edu>
Date: 2025-07-08 08:07:15 -0400
Commit message:
Merge pull request #48 from ccb-hms/RELEASE_3_21 fix vignette typos
Package: ProteinGymR
Commit: 2d2dc25c89b8de808494309d8673dff86f3ec69f
Author: Tram Nguyen <tram_nguyen@hms.harvard.edu>
Date: 2025-07-08 08:06:48 -0400
Commit message:
Commit: 2d2dc25c89b8de808494309d8673dff86f3ec69f
Author: Tram Nguyen <tram_nguyen@hms.harvard.edu>
Date: 2025-07-08 08:06:48 -0400
Commit message:
Merge branch 'devel' into RELEASE_3_21
Package: ProteinGymR
Commit: aaf4a8d1b564382244b7035a5b53cb8a450ee88f
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-07-08 12:05:20 +0000
Commit message:
Commit: aaf4a8d1b564382244b7035a5b53cb8a450ee88f
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-07-08 12:05:20 +0000
Commit message:
fixed typos
Package: ProteinGymR
Commit: 601e135f6ce8c8dbd2d84334802a6c1c0f5e3475
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-07-07 21:08:32 +0000
Commit message:
Commit: 601e135f6ce8c8dbd2d84334802a6c1c0f5e3475
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-07-07 21:08:32 +0000
Commit message:
bumped version
Package: ProteinGymR
Commit: 2d47ce8c6b972c6ee26222d8f7dbcc9bb53f2b00
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-07-07 21:08:06 +0000
Commit message:
Commit: 2d47ce8c6b972c6ee26222d8f7dbcc9bb53f2b00
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-07-07 21:08:06 +0000
Commit message:
-fixed zeroshot heatmap scaling -vignette edits Merge remote-tracking branch 'origin/devel' into RELEASE_3_21 # Conflicts: # DESCRIPTION
Package: ProteinGymR
Commit: 0b34428e52ebe03090abce719813d5eb5be2e5c0
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-06-02 14:54:58 +0000
Commit message:
Commit: 0b34428e52ebe03090abce719813d5eb5be2e5c0
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-06-02 14:54:58 +0000
Commit message:
bump version for RELEASE
Package: velociraptor
Commit: 7b11f27fecda81927d8a097823138b93ae6e7577
Author: Kevin Rue-Albrecht <kevinrue67@gmail.com>
Date: 2025-07-08 13:09:03 +0100
Commit message:
Commit: 7b11f27fecda81927d8a097823138b93ae6e7577
Author: Kevin Rue-Albrecht <kevinrue67@gmail.com>
Date: 2025-07-08 13:09:03 +0100
Commit message:
Merge remote-tracking branch 'upstream/devel' into devel
Package: velociraptor
Commit: 89fb8cc1b361672a47365d70dcd2773b891579a9
Author: Kevin Rue-Albrecht <kevinrue67@gmail.com>
Date: 2025-07-08 13:06:20 +0100
Commit message:
Commit: 89fb8cc1b361672a47365d70dcd2773b891579a9
Author: Kevin Rue-Albrecht <kevinrue67@gmail.com>
Date: 2025-07-08 13:06:20 +0100
Commit message:
Fixes needed for Bioconductor 3.22 release (#99) * bump x.y.z version to even y prior to creation of RELEASE_3_20 branch * bump x.y.z version to odd y following creation of RELEASE_3_20 branch * bump x.y.z version to even y prior to creation of RELEASE_3_21 branch * bump x.y.z version to odd y following creation of RELEASE_3_21 branch * import OS detecting functions from basilisk * update bioc version in github action * switch r version to use * add news and description * reset windows environment * Update basilisk.R * Update basilisk.R * Update basilisk.R * Update test-plotting.R * fix example * last move away from basilisk.utils * try pinning 'scvelo==0.3.3' for all three os * switch github action macos runner to match BBS (macos-arm 13) * fix conditions to match all macOS runners * fetch R version appropriate version of units for macos * downgrade llvm to last know version supported by llvmlite * remove extra steps apparently not needed for macos runners --------- Co-authored-by: J Wokaty <jennifer.wokaty@sph.cuny.edu> Co-authored-by: A Wokaty <andres.wokaty@sph.cuny.edu> Co-authored-by: Kevin Rue <kevinrue@users.noreply.github.com>
Package: asuri
Commit: 705528a47c491fe85f28dd888519a3aecc2f990d
Author: aberral <aberralgonzalez@gmail.com>
Date: 2025-07-08 11:59:18 +0200
Commit message:
Commit: 705528a47c491fe85f28dd888519a3aecc2f990d
Author: aberral <aberralgonzalez@gmail.com>
Date: 2025-07-08 11:59:18 +0200
Commit message:
initial fixes - CMD ERRORS - VIGNETTE FIX
Package: PoDCall
Commit: 10b9db7a62469760792dce7953a4524b9aa65f7d
Author: Hans Petter Brodal <hanspbr@uio.no>
Date: 2025-07-08 10:44:33 +0200
Commit message:
Commit: 10b9db7a62469760792dce7953a4524b9aa65f7d
Author: Hans Petter Brodal <hanspbr@uio.no>
Date: 2025-07-08 10:44:33 +0200
Commit message:
Fixed conflicts in version change
Package: PoDCall
Commit: ea07dc95f0f964057d2d664aec77cf6181899272
Author: Hans Petter Brodal <hanspbr@uio.no>
Date: 2025-07-08 10:38:27 +0200
Commit message:
Commit: ea07dc95f0f964057d2d664aec77cf6181899272
Author: Hans Petter Brodal <hanspbr@uio.no>
Date: 2025-07-08 10:38:27 +0200
Commit message:
Added alternative way to set threshold for instances when it would otherwise be returned as NA. Bumped version.
Package: GenVisR
Commit: 6b022978f0e8876c712b478f3fb5ab99a947bc56
Author: zlskidmore <zlskidmore@gmail.com>
Date: 2025-07-07 19:57:40 -0500
Commit message:
Commit: 6b022978f0e8876c712b478f3fb5ab99a947bc56
Author: zlskidmore <zlskidmore@gmail.com>
Date: 2025-07-07 19:57:40 -0500
Commit message:
formally deprecate all vdiffr functions, and attempt to work around data.table melt and dcast issues
Package: MetabolomicsPipeline
Commit: edf925863fd53829dd53daccb0a4e62a72f33b04
Author: joelparkeruofa <joelparker@arizona.edu>
Date: 2025-07-07 15:57:15 -0700
Commit message:
Commit: edf925863fd53829dd53daccb0a4e62a72f33b04
Author: joelparkeruofa <joelparker@arizona.edu>
Date: 2025-07-07 15:57:15 -0700
Commit message:
updating to camel casing
Package: GEOquery
Commit: c9f0784e31b14aa7b0872e250452f5fa60830c75
Author: Sean Davis <seandavi@gmail.com>
Date: 2025-07-07 15:26:32 -0700
Commit message:
Commit: c9f0784e31b14aa7b0872e250452f5fa60830c75
Author: Sean Davis <seandavi@gmail.com>
Date: 2025-07-07 15:26:32 -0700
Commit message:
version bump
Package: GEOquery
Commit: 547d01fdea84901bc657b54b2c476b46eb3c33eb
Author: Sean Davis <seandavi@gmail.com>
Date: 2025-07-07 15:25:35 -0700
Commit message:
Commit: 547d01fdea84901bc657b54b2c476b46eb3c33eb
Author: Sean Davis <seandavi@gmail.com>
Date: 2025-07-07 15:25:35 -0700
Commit message:
Merge branch 'devel' of git.bioconductor.org:packages/GEOquery into devel
Package: GEOquery
Commit: c83c5ab5fd3f3af99e80c228503043624a1dbe58
Author: Sean Davis <seandavi@gmail.com>
Date: 2025-07-07 15:21:00 -0700
Commit message:
Commit: c83c5ab5fd3f3af99e80c228503043624a1dbe58
Author: Sean Davis <seandavi@gmail.com>
Date: 2025-07-07 15:21:00 -0700
Commit message:
Merge branch 'main' into devel
Package: GEOquery
Commit: 974828c6f3a54a639bf15cd0ad8c94beacf799bc
Author: Sean Davis <seandavi@gmail.com>
Date: 2025-07-07 15:17:53 -0700
Commit message:
Commit: 974828c6f3a54a639bf15cd0ad8c94beacf799bc
Author: Sean Davis <seandavi@gmail.com>
Date: 2025-07-07 15:17:53 -0700
Commit message:
bug fix in rna-seq handling When GEO processes RNA-seq data, they drop samples that do not meet QC criteria. This results in a mismatch between the sample information in the GSE and the quantifications that GEO produces. This fix just matches the names to limit to only those samples with quantification available.
Package: GEOquery
Commit: ed73c1a3a6208b5723d75aa65f3da02f77f809b4
Author: Sean Davis <seandavi@gmail.com>
Date: 2024-11-08 10:30:31 -0500
Commit message:
Commit: ed73c1a3a6208b5723d75aa65f3da02f77f809b4
Author: Sean Davis <seandavi@gmail.com>
Date: 2024-11-08 10:30:31 -0500
Commit message:
Add citation.cff
Package: mia
Commit: 95ee8b1c13c7699f405b20569c80d4df6a23a5dd
Author: Tuomas Borman <60338854+TuomasBorman@users.noreply.github.com>
Date: 2025-07-08 00:09:54 +0300
Commit message:
Commit: 95ee8b1c13c7699f405b20569c80d4df6a23a5dd
Author: Tuomas Borman <60338854+TuomasBorman@users.noreply.github.com>
Date: 2025-07-08 00:09:54 +0300
Commit message:
Fix unit tests (#747)
Package: ProteinGymR
Commit: d45bfad5383730cebd159f1cb950cd897453877e
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-07-07 21:10:19 +0000
Commit message:
Commit: d45bfad5383730cebd159f1cb950cd897453877e
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-07-07 21:10:19 +0000
Commit message:
bumped version
Package: ProteinGymR
Commit: 6e7aa2eab35edff9bccbb347111f7fe8c10f3a45
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-07-07 21:00:24 +0000
Commit message:
Commit: 6e7aa2eab35edff9bccbb347111f7fe8c10f3a45
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-07-07 21:00:24 +0000
Commit message:
fixed numbering typo
Package: ProteinGymR
Commit: 91c6100db7f249d8332df6ab1dde3520f9c5ccde
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-07-07 20:59:56 +0000
Commit message:
Commit: 91c6100db7f249d8332df6ab1dde3520f9c5ccde
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-07-07 20:59:56 +0000
Commit message:
edits to visualization vignette
Package: ProteinGymR
Commit: 487e8f138ed4a40f958f69f321db49bd35ee8b3c
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-06-18 14:54:55 -0400
Commit message:
Commit: 487e8f138ed4a40f958f69f321db49bd35ee8b3c
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-06-18 14:54:55 -0400
Commit message:
bug fix for model heatmap scaling
Package: ProteinGymR
Commit: 17eef1b7fa25a4ddb51a9e31694c9348e9a67129
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-06-18 11:49:19 -0400
Commit message:
Commit: 17eef1b7fa25a4ddb51a9e31694c9348e9a67129
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-06-18 11:49:19 -0400
Commit message:
polish up data vignette
Package: fgsea
Commit: d6f1670c60bbc48ad1a95f98dc52921ec98d2542
Author: Alexey Sergushichev <alsergbox@gmail.com>
Date: 2025-07-07 15:59:21 -0500
Commit message:
Commit: d6f1670c60bbc48ad1a95f98dc52921ec98d2542
Author: Alexey Sergushichev <alsergbox@gmail.com>
Date: 2025-07-07 15:59:21 -0500
Commit message:
version bump
Package: fgsea
Commit: 8e64800f60cc1bcf9466cec5e743e4d981fb32e8
Author: Alexey Sergushichev <alsergbox@gmail.com>
Date: 2025-07-07 13:11:46 -0500
Commit message:
Commit: 8e64800f60cc1bcf9466cec5e743e4d981fb32e8
Author: Alexey Sergushichev <alsergbox@gmail.com>
Date: 2025-07-07 13:11:46 -0500
Commit message:
specify name of msigdbr arguments
Package: NanoStringNCTools
Commit: 6c5e9350a8d3217c09685ed5e1215c6a0a348928
Author: Maddy Griswold <mgriswold@nanostring.com>
Date: 2025-07-07 12:32:39 -0600
Commit message:
Commit: 6c5e9350a8d3217c09685ed5e1215c6a0a348928
Author: Maddy Griswold <mgriswold@nanostring.com>
Date: 2025-07-07 12:32:39 -0600
Commit message:
dev version
Package: NanoStringNCTools
Commit: 5c9db853f986c701ac2f13cd616c937558d03b64
Author: Griswold <Madison.Griswold@bruker.com>
Date: 2025-07-07 12:11:12 -0600
Commit message:
Commit: 5c9db853f986c701ac2f13cd616c937558d03b64
Author: Griswold <Madison.Griswold@bruker.com>
Date: 2025-07-07 12:11:12 -0600
Commit message:
version merge
Package: NanoStringNCTools
Commit: f318d38b803015b11b2b1b608911aed6a6503588
Author: Maddy Griswold <40255151+maddygriz@users.noreply.github.com>
Date: 2025-07-07 12:08:04 -0600
Commit message:
Commit: f318d38b803015b11b2b1b608911aed6a6503588
Author: Maddy Griswold <40255151+maddygriz@users.noreply.github.com>
Date: 2025-07-07 12:08:04 -0600
Commit message:
update to bioc version
Package: NanoStringNCTools
Commit: cbec1b3b1f2f8856aef5a7288388b4b87918df03
Author: Griswold <Madison.Griswold@bruker.com>
Date: 2025-07-07 11:56:44 -0600
Commit message:
Commit: cbec1b3b1f2f8856aef5a7288388b4b87918df03
Author: Griswold <Madison.Griswold@bruker.com>
Date: 2025-07-07 11:56:44 -0600
Commit message:
Merge remote-tracking branch 'upstream/devel'
Package: NanoStringNCTools
Commit: 8da0197d2e6f4527730b511537d9ff93800a7c78
Author: Maddy Griswold <40255151+maddygriz@users.noreply.github.com>
Date: 2025-07-07 11:08:00 -0600
Commit message:
Commit: 8da0197d2e6f4527730b511537d9ff93800a7c78
Author: Maddy Griswold <40255151+maddygriz@users.noreply.github.com>
Date: 2025-07-07 11:08:00 -0600
Commit message:
Merge pull request #40 from Nanostring-Biostats/envBug Environments cannot be NULL
Package: NanoStringNCTools
Commit: a3f442e4306fab00ad84a7c2d06d15f0cfee0737
Author: Maddy Griswold <40255151+maddygriz@users.noreply.github.com>
Date: 2025-05-19 09:36:06 -0600
Commit message:
Commit: a3f442e4306fab00ad84a7c2d06d15f0cfee0737
Author: Maddy Griswold <40255151+maddygriz@users.noreply.github.com>
Date: 2025-05-19 09:36:06 -0600
Commit message:
Update to Bruker signature
Package: NanoStringNCTools
Commit: 955c8db46305766ee5664edf564e5ddb8a8052f5
Author: Maddy Griswold <mgriswold@nanostring.com>
Date: 2025-04-30 19:44:27 +0000
Commit message:
Commit: 955c8db46305766ee5664edf564e5ddb8a8052f5
Author: Maddy Griswold <mgriswold@nanostring.com>
Date: 2025-04-30 19:44:27 +0000
Commit message:
new environment
Package: NanoStringNCTools
Commit: b18f4949bd65862ef27a1a38f87ed7b5d83e26ca
Author: Maddy Griswold <40255151+maddygriz@users.noreply.github.com>
Date: 2024-12-16 11:05:24 -0700
Commit message:
Commit: b18f4949bd65862ef27a1a38f87ed7b5d83e26ca
Author: Maddy Griswold <40255151+maddygriz@users.noreply.github.com>
Date: 2024-12-16 11:05:24 -0700
Commit message:
update to bruker support email
Package: immunotation
Commit: 6def00b68d74700129af030bd3a2f994d4f10f27
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2025-07-07 13:08:19 -0400
Commit message:
Commit: 6def00b68d74700129af030bd3a2f994d4f10f27
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2025-07-07 13:08:19 -0400
Commit message:
Deprecated - unresponsive - email bounced
Package: qckitfastq
Commit: 6157afcc7596d5b1f442040f8886beea24be24aa
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2025-07-07 12:54:41 -0400
Commit message:
Commit: 6157afcc7596d5b1f442040f8886beea24be24aa
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2025-07-07 12:54:41 -0400
Commit message:
Deprecated - unresponsive
Package: ELViS
Commit: 24a63cbf47ca7afdada036e19a6693d9576a8f77
Author: jlee307@uthsc.edu <jlee307@login2.cn.isaac.utk.edu>
Date: 2025-07-07 12:46:37 -0400
Commit message:
Commit: 24a63cbf47ca7afdada036e19a6693d9576a8f77
Author: jlee307@uthsc.edu <jlee307@login2.cn.isaac.utk.edu>
Date: 2025-07-07 12:46:37 -0400
Commit message:
bug fix
Package: XNAString
Commit: b20a70bf7d0f54b41ebd11f5b38fccdcc6a65e14
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2025-07-07 12:39:25 -0400
Commit message:
Commit: b20a70bf7d0f54b41ebd11f5b38fccdcc6a65e14
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2025-07-07 12:39:25 -0400
Commit message:
Deprecation - unresponsive - emails bounced
Package: Rfastp
Commit: 7b7ac5f4326296235dcd7251fbe2a847c2bb64d1
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2025-07-07 12:36:36 -0400
Commit message:
Commit: 7b7ac5f4326296235dcd7251fbe2a847c2bb64d1
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2025-07-07 12:36:36 -0400
Commit message:
Deprecate - unresponsive
Package: MADSEQ
Commit: dbdc7a667792aa2aa0df8e0ac3132e9e13507c56
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2025-07-07 12:29:00 -0400
Commit message:
Commit: dbdc7a667792aa2aa0df8e0ac3132e9e13507c56
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2025-07-07 12:29:00 -0400
Commit message:
Deprecated - unresponsive
Package: Harshlight
Commit: 5d2eb5d3803237823196d597301ed86ff6645f8e
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2025-07-07 12:24:28 -0400
Commit message:
Commit: 5d2eb5d3803237823196d597301ed86ff6645f8e
Author: lshep <lori.shepherd@roswellpark.org>
Date: 2025-07-07 12:24:28 -0400
Commit message:
Deprecated - unresponsive - email bounced
Package: DeeDeeExperiment
Commit: 5e9ba2bfc6898b18bde19a947422063e595da33e
Author: Najla Abassi <abassi.nejla96@gmail.com>
Date: 2025-07-07 16:44:31 +0200
Commit message:
Commit: 5e9ba2bfc6898b18bde19a947422063e595da33e
Author: Najla Abassi <abassi.nejla96@gmail.com>
Date: 2025-07-07 16:44:31 +0200
Commit message:
updating the news and version bump 0.99.1
Package: vsclust
Commit: 900f4303639e10a90e70fed989138bbefdfaf229
Author: veitveit <veits@bmb.sdu.dk>
Date: 2025-07-07 10:15:51 +0200
Commit message:
Commit: 900f4303639e10a90e70fed989138bbefdfaf229
Author: veitveit <veits@bmb.sdu.dk>
Date: 2025-07-07 10:15:51 +0200
Commit message:
versioning
Package: vsclust
Commit: 54c3047400be2b97c4ba54bcf561036d90022139
Author: veitveit <veits@bmb.sdu.dk>
Date: 2025-07-07 10:15:08 +0200
Commit message:
Commit: 54c3047400be2b97c4ba54bcf561036d90022139
Author: veitveit <veits@bmb.sdu.dk>
Date: 2025-07-07 10:15:08 +0200
Commit message:
fixes for bioconductor
Package: vsclust
Commit: b38c29c5a9f7e850d7eb9f8dbc3986da2f5d6064
Author: veitveit <veits@bmb.sdu.dk>
Date: 2025-07-07 10:14:58 +0200
Commit message:
Commit: b38c29c5a9f7e850d7eb9f8dbc3986da2f5d6064
Author: veitveit <veits@bmb.sdu.dk>
Date: 2025-07-07 10:14:58 +0200
Commit message:
fixes for bioconductor
Package: SpectriPy
Commit: 2422daf5583c89b82a84dacc5e2acb5b0440e4b5
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-07 09:32:34 +0200
Commit message:
Commit: 2422daf5583c89b82a84dacc5e2acb5b0440e4b5
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-07 09:32:34 +0200
Commit message:
refactor: force immediate loading of Python libraries
Package: SpectriPy
Commit: 31c783304662e199ac796e637288f8e95efb7cec
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-04 16:02:37 +0200
Commit message:
Commit: 31c783304662e199ac796e637288f8e95efb7cec
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-04 16:02:37 +0200
Commit message:
docs: update/fix installation instructions - Update the README pointing to the new configuration. - Update the installation instruction vignette.
Package: BgeeCall
Commit: bd5e591be69aeafd9950333f740c22c2651984ae
Author: Julien Wollbrett <julien.wollbrett@unil.ch>
Date: 2025-07-07 09:30:26 +0200
Commit message:
Commit: bd5e591be69aeafd9950333f740c22c2651984ae
Author: Julien Wollbrett <julien.wollbrett@unil.ch>
Date: 2025-07-07 09:30:26 +0200
Commit message:
add last missing dependencies
Package: AlphaMissenseR
Commit: 66a10dcf61a33648b22da86df21a3f9596562ecc
Author: Martin Morgan <mtmorgan.xyz@gmail.com>
Date: 2025-07-06 18:44:43 -0400
Commit message:
Commit: 66a10dcf61a33648b22da86df21a3f9596562ecc
Author: Martin Morgan <mtmorgan.xyz@gmail.com>
Date: 2025-07-06 18:44:43 -0400
Commit message:
Merge branch 'ccb-hms-devel' into devel
Package: AlphaMissenseR
Commit: cc85322f3d8731212ed6d2e37be44cd1107d1b32
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-06-30 15:55:20 +0000
Commit message:
Commit: cc85322f3d8731212ed6d2e37be44cd1107d1b32
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-06-30 15:55:20 +0000
Commit message:
bump version
Package: AlphaMissenseR
Commit: 2b7636d7ca335575fcf06edb8eb554ab26fb3e0c
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-06-30 15:55:02 +0000
Commit message:
Commit: 2b7636d7ca335575fcf06edb8eb554ab26fb3e0c
Author: tram-nguyen-n <tram_nguyen@hms.harvard.edu>
Date: 2025-06-30 15:55:02 +0000
Commit message:
require GenomicRanges duckdb >= 1.3.1
Package: epistasisGA
Commit: 94dbf1e1a8d4585e2d2e8b8092fa43c1f31bfbd2
Author: mnodzenski <michael.nodzenski@gmail.com>
Date: 2025-07-06 14:40:40 -0400
Commit message:
Commit: 94dbf1e1a8d4585e2d2e8b8092fa43c1f31bfbd2
Author: mnodzenski <michael.nodzenski@gmail.com>
Date: 2025-07-06 14:40:40 -0400
Commit message:
bump version number to build E-GADGETS update
Package: epistasisGA
Commit: 72dee36a931af0efe45226bfff2c5969c9bd992f
Author: mnodzenski <michael.nodzenski@gmail.com>
Date: 2023-02-15 16:00:27 -0500
Commit message:
Commit: 72dee36a931af0efe45226bfff2c5969c9bd992f
Author: mnodzenski <michael.nodzenski@gmail.com>
Date: 2023-02-15 16:00:27 -0500
Commit message:
Updated version of E-GADGETS with new nomination procedure for risk alleles and permuting exposure in the standardization step.
Package: epistasisGA
Commit: 5646bd125b573953960e8f509f3055f20c1070fd
Author: Michael Nodzenski <michael.nodzenski@gmail.com>
Date: 2025-07-06 13:24:12 -0400
Commit message:
Commit: 5646bd125b573953960e8f509f3055f20c1070fd
Author: Michael Nodzenski <michael.nodzenski@gmail.com>
Date: 2025-07-06 13:24:12 -0400
Commit message:
Merge pull request #2 from SciomeLLC/dev Vignette modifications and bug fix for missing data preprocessing
Package: epistasisGA
Commit: aed48a4eec3e4998862d39f80617832987d96b02
Author: sciome-bot <software.tools@sciome.com>
Date: 2024-06-25 16:23:40 -0400
Commit message:
Commit: aed48a4eec3e4998862d39f80617832987d96b02
Author: sciome-bot <software.tools@sciome.com>
Date: 2024-06-25 16:23:40 -0400
Commit message:
Merge branch 'master' of github-sciome-bot:SciomeLLC/epistasisGA into dev
Package: epistasisGA
Commit: 824630703e9d7ced09d0b21df697c8339b14fa9a
Author: sciome-bot <software.tools@sciome.com>
Date: 2024-06-25 16:22:53 -0400
Commit message:
Commit: 824630703e9d7ced09d0b21df697c8339b14fa9a
Author: sciome-bot <software.tools@sciome.com>
Date: 2024-06-25 16:22:53 -0400
Commit message:
fixing bug in missing data preprocessing
Package: epistasisGA
Commit: 5481a6ebc435929fafe3d7449a5e840d30a7c5f0
Author: sciome-bot <software.tools@sciome.com>
Date: 2024-03-27 10:28:27 -0400
Commit message:
Commit: 5481a6ebc435929fafe3d7449a5e840d30a7c5f0
Author: sciome-bot <software.tools@sciome.com>
Date: 2024-03-27 10:28:27 -0400
Commit message:
Modifying vignette to clarify global permutation tests vs. not. fleshing out information on SNPs in the same LD block.
Package: epistasisGA
Commit: 47b4d305def824a72a5481235c613355a39bf903
Author: Taylor Petty <Taylor.Petty@sciome.com>
Date: 2024-03-15 11:54:22 -0400
Commit message:
Commit: 47b4d305def824a72a5481235c613355a39bf903
Author: Taylor Petty <Taylor.Petty@sciome.com>
Date: 2024-03-15 11:54:22 -0400
Commit message:
Final change to markdown -- change from David and Clare
Package: epistasisGA
Commit: bbb85cbcdc1f0139a059247882c26ed4bf79fcd6
Author: Taylor Petty <Taylor.Petty@sciome.com>
Date: 2024-03-13 16:29:31 -0400
Commit message:
Commit: bbb85cbcdc1f0139a059247882c26ed4bf79fcd6
Author: Taylor Petty <Taylor.Petty@sciome.com>
Date: 2024-03-13 16:29:31 -0400
Commit message:
remove explanation of why external data, per David's suggestion
Package: epistasisGA
Commit: 1696b9fe400bde5cc45aa4c7d50b14128a13ab85
Author: Taylor Petty <Taylor.Petty@sciome.com>
Date: 2024-03-13 11:38:17 -0400
Commit message:
Commit: 1696b9fe400bde5cc45aa4c7d50b14128a13ab85
Author: Taylor Petty <Taylor.Petty@sciome.com>
Date: 2024-03-13 11:38:17 -0400
Commit message:
Minor additions from Clare
Package: epistasisGA
Commit: 026fe9faa0d6a37cc98eb28d1283f405312c760f
Author: Taylor Petty <Taylor.Petty@sciome.com>
Date: 2024-03-12 15:03:57 -0400
Commit message:
Commit: 026fe9faa0d6a37cc98eb28d1283f405312c760f
Author: Taylor Petty <Taylor.Petty@sciome.com>
Date: 2024-03-12 15:03:57 -0400
Commit message:
fleshing out information on SNPs in the same LD block
Package: epistasisGA
Commit: 93eb8f09d174b1faf999e609be089d67105594a2
Author: Taylor Petty <Taylor.Petty@sciome.com>
Date: 2024-03-12 13:23:03 -0400
Commit message:
Commit: 93eb8f09d174b1faf999e609be089d67105594a2
Author: Taylor Petty <Taylor.Petty@sciome.com>
Date: 2024-03-12 13:23:03 -0400
Commit message:
Modifying vignette to clarify global permutation tests vs. not
Package: epialleleR
Commit: a330d040243300ef86cea9bce2fde1fd09442e58
Author: Oleksii.Nikolaienko <oleksii.nikolaienko@uib.no>
Date: 2025-07-06 13:52:13 +0200
Commit message:
Commit: a330d040243300ef86cea9bce2fde1fd09442e58
Author: Oleksii.Nikolaienko <oleksii.nikolaienko@uib.no>
Date: 2025-07-06 13:52:13 +0200
Commit message:
fix documentation crosslinks
Package: epialleleR
Commit: 6e0a1af34aee2afe29f177a2aaa53946920b0f33
Author: Oleksii.Nikolaienko <oleksii.nikolaienko@uib.no>
Date: 2025-07-06 13:31:29 +0200
Commit message:
Commit: 6e0a1af34aee2afe29f177a2aaa53946920b0f33
Author: Oleksii.Nikolaienko <oleksii.nikolaienko@uib.no>
Date: 2025-07-06 13:31:29 +0200
Commit message:
GenomeInfoDb to Seqinfo
Package: epialleleR
Commit: d92bd1ae217adcc83890a0855d6c85c01a5fee96
Author: Oleksii.Nikolaienko <oleksii.nikolaienko@uib.no>
Date: 2025-07-05 20:52:30 +0200
Commit message:
Commit: d92bd1ae217adcc83890a0855d6c85c01a5fee96
Author: Oleksii.Nikolaienko <oleksii.nikolaienko@uib.no>
Date: 2025-07-05 20:52:30 +0200
Commit message:
fresh check
Package: ramr
Commit: 87b137fc8656d351572a96c03cfb195d816985e1
Author: Oleksii.Nikolaienko <oleksii.nikolaienko@uib.no>
Date: 2025-07-06 13:03:47 +0200
Commit message:
Commit: 87b137fc8656d351572a96c03cfb195d816985e1
Author: Oleksii.Nikolaienko <oleksii.nikolaienko@uib.no>
Date: 2025-07-06 13:03:47 +0200
Commit message:
GenomeInfoDb to Seqinfo
Package: ramr
Commit: 8bba30d48def5e7f855c979a097980c0f5258c90
Author: Oleksii.Nikolaienko <oleksii.nikolaienko@uib.no>
Date: 2025-07-05 21:24:19 +0200
Commit message:
Commit: 8bba30d48def5e7f855c979a097980c0f5258c90
Author: Oleksii.Nikolaienko <oleksii.nikolaienko@uib.no>
Date: 2025-07-05 21:24:19 +0200
Commit message:
fresh check
Package: Aerith
Commit: 39ba1fa008d94a43f6e30d32c7497acce744ed94
Author: xyz1396 <1074082710@qq.com>
Date: 2025-07-06 02:19:30 -0500
Commit message:
Commit: 39ba1fa008d94a43f6e30d32c7497acce744ed94
Author: xyz1396 <1074082710@qq.com>
Date: 2025-07-06 02:19:30 -0500
Commit message:
bump version
Package: Aerith
Commit: a74cebba9cfa4fecebce9b1133378a073cdf295d
Author: xyz1396 <1074082710@qq.com>
Date: 2025-07-06 02:13:21 -0500
Commit message:
Commit: a74cebba9cfa4fecebce9b1133378a073cdf295d
Author: xyz1396 <1074082710@qq.com>
Date: 2025-07-06 02:13:21 -0500
Commit message:
Merge updates for .gitignore, plotPSMs.R, readScans.cpp, and test_scorePSM.R from dev branch for fix R CMD check error
Package: stPipe
Commit: 7dc40c0913618f23c23de7e45d37f3b75dfffd3c
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-07-05 18:22:32 +1000
Commit message:
Commit: 7dc40c0913618f23c23de7e45d37f3b75dfffd3c
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-07-05 18:22:32 +1000
Commit message:
Version update and adressing warnings.
Package: Coralysis
Commit: 216b175ffc5c13a1c8648847ff02af87be6eea98
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-05 10:05:20 +0300
Commit message:
Commit: 216b175ffc5c13a1c8648847ff02af87be6eea98
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-05 10:05:20 +0300
Commit message:
Testing Coralysis logo rendenring size
Package: Coralysis
Commit: 818194e80e7b711fa9a229959fbcd95267855496
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-05 10:02:18 +0300
Commit message:
Commit: 818194e80e7b711fa9a229959fbcd95267855496
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-05 10:02:18 +0300
Commit message:
Testing Coralysis logo rendenring size
Package: Coralysis
Commit: b28a0ce63bbf6901beae987148a836a82b57a535
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-04 16:27:49 +0300
Commit message:
Commit: b28a0ce63bbf6901beae987148a836a82b57a535
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-04 16:27:49 +0300
Commit message:
Testing Coralysis logo rendenring size
Package: Coralysis
Commit: ae73f69d1f369b84e28f171012114dd9d17f18e8
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-04 16:21:47 +0300
Commit message:
Commit: ae73f69d1f369b84e28f171012114dd9d17f18e8
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-04 16:21:47 +0300
Commit message:
Testing Coralysis logo rendenring size
Package: Coralysis
Commit: 109f1548a0a7bc0409a74bd81b29621bd8779cc3
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-04 16:20:37 +0300
Commit message:
Commit: 109f1548a0a7bc0409a74bd81b29621bd8779cc3
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-04 16:20:37 +0300
Commit message:
Testing Coralysis logo rendenring size
Package: Coralysis
Commit: 8ebee30ae086adf2f590eda0d6931af5f1235f7c
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-04 16:18:27 +0300
Commit message:
Commit: 8ebee30ae086adf2f590eda0d6931af5f1235f7c
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-04 16:18:27 +0300
Commit message:
Testing Coralysis logo rendenring size
Package: gdsfmt
Commit: ff1082fbad07defaab2f8c6a3a42861811b4f26a
Author: Xiuwen Zheng <zhengxwen@gmail.com>
Date: 2025-07-05 00:12:34 -0500
Commit message:
Commit: ff1082fbad07defaab2f8c6a3a42861811b4f26a
Author: Xiuwen Zheng <zhengxwen@gmail.com>
Date: 2025-07-05 00:12:34 -0500
Commit message:
fast appending
Package: SeqArray
Commit: 309bc2316bf5c92a7ac6cad92f44f79fa0341330
Author: Xiuwen Zheng <zhengxwen@gmail.com>
Date: 2025-07-05 00:00:02 -0500
Commit message:
Commit: 309bc2316bf5c92a7ac6cad92f44f79fa0341330
Author: Xiuwen Zheng <zhengxwen@gmail.com>
Date: 2025-07-05 00:00:02 -0500
Commit message:
parallel seqDigest()
Package: edgeR
Commit: 26fba820320d7ebb7ae7e609955c1af0af7663bb
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2025-07-05 11:29:48 +1000
Commit message:
Commit: 26fba820320d7ebb7ae7e609955c1af0af7663bb
Author: Gordon Smyth <smyth@wehi.edu.au>
Date: 2025-07-05 11:29:48 +1000
Commit message:
edgeR 4.7.3 - New function catchOarfish. - New argument `path` for catchRSEM.
Package: ontoProc
Commit: 9763147bd1d33db87b5922f7e34eaa52daa0cc8e
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-07-04 14:12:23 -0400
Commit message:
Commit: 9763147bd1d33db87b5922f7e34eaa52daa0cc8e
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-07-04 14:12:23 -0400
Commit message:
improve formalize function
Package: GenomicScores
Commit: dd870d995f25a7c51a67c51cc6fb74dd0e728f22
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-07-04 19:23:05 +0200
Commit message:
Commit: dd870d995f25a7c51a67c51cc6fb74dd0e728f22
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-07-04 19:23:05 +0200
Commit message:
Fixed GHA workflow for release
Package: GenomicScores
Commit: 149d977e1fa73025a0766516bc5c3f1f56603bd2
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-07-04 18:47:52 +0200
Commit message:
Commit: 149d977e1fa73025a0766516bc5c3f1f56603bd2
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-07-04 18:47:52 +0200
Commit message:
Fixed coverage badge in README
Package: GenomicScores
Commit: fea1c6bd9b51b301b7c4392032fe4f9a8aa69360
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-07-04 18:26:06 +0200
Commit message:
Commit: fea1c6bd9b51b301b7c4392032fe4f9a8aa69360
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-07-04 18:26:06 +0200
Commit message:
Added workflow_dispatch to GHA workflow
Package: GenomicScores
Commit: b325af1a3d77b4349a59a67f605e8f819c97e097
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-07-04 18:13:41 +0200
Commit message:
Commit: b325af1a3d77b4349a59a67f605e8f819c97e097
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-07-04 18:13:41 +0200
Commit message:
Bump version
Package: GenomicScores
Commit: 18d6ddccf6bd26ddae84c355f47869afdf6ad9e7
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-07-04 18:13:27 +0200
Commit message:
Commit: 18d6ddccf6bd26ddae84c355f47869afdf6ad9e7
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-07-04 18:13:27 +0200
Commit message:
Fixed resources metadata and documentation problems
Package: Coralysis
Commit: a0a11eb2943d210284fedc984085d14091511e2e
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-04 16:10:53 +0300
Commit message:
Commit: a0a11eb2943d210284fedc984085d14091511e2e
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-04 16:10:53 +0300
Commit message:
Add funding
Package: Coralysis
Commit: d15ef6e5ae2d33eac340bd7c525bdb65b27a3b27
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-04 13:46:37 +0300
Commit message:
Commit: d15ef6e5ae2d33eac340bd7c525bdb65b27a3b27
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-04 13:46:37 +0300
Commit message:
Fix formatting issues
Package: Coralysis
Commit: bb46cb52ab6f8b1c731899e7bc470ea3d333352c
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-04 13:28:26 +0300
Commit message:
Commit: bb46cb52ab6f8b1c731899e7bc470ea3d333352c
Author: antonioggsousa <antonioggsousa@gmail.com>
Date: 2025-07-04 13:28:26 +0300
Commit message:
Updating the README.md file
Package: Coralysis
Commit: f97606fdaf7c6e79f6fa5205a8469f8ff79439a7
Author: Antonio Goncalves de Sousa <aggode@node03.novalocal>
Date: 2025-06-27 10:14:20 +0300
Commit message:
Commit: f97606fdaf7c6e79f6fa5205a8469f8ff79439a7
Author: Antonio Goncalves de Sousa <aggode@node03.novalocal>
Date: 2025-06-27 10:14:20 +0300
Commit message:
Fixing alias name typo
Package: ontoProc
Commit: e962d95c605de3ec1f5585dc6f5938774aa181e1
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-07-04 06:31:55 -0400
Commit message:
Commit: e962d95c605de3ec1f5585dc6f5938774aa181e1
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-07-04 06:31:55 -0400
Commit message:
add the demonstration mapping with ellmer
Package: stPipe
Commit: fb2ff37f286ebda232a4cab3a1e446ad1624e14c
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-07-04 17:44:21 +1000
Commit message:
Commit: fb2ff37f286ebda232a4cab3a1e446ad1624e14c
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-07-04 17:44:21 +1000
Commit message:
Version update.
Package: stPipe
Commit: 98246b5469f138f29541a9aea476c640ec184593
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-07-04 17:43:59 +1000
Commit message:
Commit: 98246b5469f138f29541a9aea476c640ec184593
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-07-04 17:43:59 +1000
Commit message:
Rename progressbar.
Package: stPipe
Commit: 5c5ec2143e829afddd866dc5eddc12c2e1fdf5d1
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-07-04 17:38:44 +1000
Commit message:
Commit: 5c5ec2143e829afddd866dc5eddc12c2e1fdf5d1
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-07-04 17:38:44 +1000
Commit message:
Replace cout with Rcpp::Rcout.
Package: SpectriPy
Commit: 9d639a666c107ef9816f7e3ddde1ccd27f0180c3
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-04 09:24:13 +0200
Commit message:
Commit: 9d639a666c107ef9816f7e3ddde1ccd27f0180c3
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-04 09:24:13 +0200
Commit message:
docs: add labels to vignette code chunks
Package: stPipe
Commit: 89a4b6dd5cd41ecebfe026787278f1967bdc31ff
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-07-04 17:34:58 +1000
Commit message:
Commit: 89a4b6dd5cd41ecebfe026787278f1967bdc31ff
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-07-04 17:34:58 +1000
Commit message:
Replace << endl; with + n;.
Package: SpectriPy
Commit: 05f30dbb32c0f51fa228bc67fc55c2888f3295f0
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-03 09:14:21 +0200
Commit message:
Commit: 05f30dbb32c0f51fa228bc67fc55c2888f3295f0
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-03 09:14:21 +0200
Commit message:
ci: set RETICULATE_PYTHON_ENV to .Rprofile for macOS
Package: SpectriPy
Commit: 661c1f77191eb5ef3d90f641b00b4148d2e0fb46
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-03 08:24:16 +0200
Commit message:
Commit: 661c1f77191eb5ef3d90f641b00b4148d2e0fb46
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-03 08:24:16 +0200
Commit message:
ci: use RETICULATE_PYTHON_ENV on macOS
Package: SpectriPy
Commit: ed4f98bd7460ca3c7502a50b3f06376866674f81
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-03 07:50:56 +0200
Commit message:
Commit: ed4f98bd7460ca3c7502a50b3f06376866674f81
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-03 07:50:56 +0200
Commit message:
ci: next try to fix macOS GHA
Package: SpectriPy
Commit: faaac109090d4cbb8a9ce488c646f1a979651490
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-02 15:05:08 +0200
Commit message:
Commit: faaac109090d4cbb8a9ce488c646f1a979651490
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-02 15:05:08 +0200
Commit message:
ci: create full virtualenv for macOS
Package: SpectriPy
Commit: 68bed8e8326949e8114a18dcb564142174b82837
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-02 14:43:48 +0200
Commit message:
Commit: 68bed8e8326949e8114a18dcb564142174b82837
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-02 14:43:48 +0200
Commit message:
ci: create a virtual env for macOS
Package: SpectriPy
Commit: 323d1d602e4f9ddb53e68e23986f3b8b770e8743
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-02 14:15:49 +0200
Commit message:
Commit: 323d1d602e4f9ddb53e68e23986f3b8b770e8743
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-02 14:15:49 +0200
Commit message:
ci: remove forced installation of reticulate on macOS
Package: SpectriPy
Commit: cdd4f74599140a7ee3d40119785e69e95eac99c5
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-02 11:03:03 +0200
Commit message:
Commit: cdd4f74599140a7ee3d40119785e69e95eac99c5
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-07-02 11:03:03 +0200
Commit message:
refactor: use py_require instead of manual library installation - Change to the new suggested `py_require()` functions from *reticulate* (issue #81).
Package: SpectriPy
Commit: aa7104b0106a763eda4cfa6747c14d965f3dd121
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-06-13 11:45:16 +0200
Commit message:
Commit: aa7104b0106a763eda4cfa6747c14d965f3dd121
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-06-13 11:45:16 +0200
Commit message:
ci: install Python through reticulate on macOS
Package: SpectriPy
Commit: daab62bb647eea0c0994177d3d01b53ddded927f
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-06-13 10:34:50 +0200
Commit message:
Commit: daab62bb647eea0c0994177d3d01b53ddded927f
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-06-13 10:34:50 +0200
Commit message:
ci: use dependencies = TRUE
Package: SpectriPy
Commit: 51625b4dd95fd06d328f647f1006dfd2644f1b66
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-06-13 08:10:15 +0200
Commit message:
Commit: 51625b4dd95fd06d328f647f1006dfd2644f1b66
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-06-13 08:10:15 +0200
Commit message:
ci: disable package caching on linux
Package: SpectriPy
Commit: 1f49f1ed19471c5c61ba249421efe9dc30c0949c
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-06-13 07:42:48 +0200
Commit message:
Commit: 1f49f1ed19471c5c61ba249421efe9dc30c0949c
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-06-13 07:42:48 +0200
Commit message:
ci: macOS install python with brew
Package: SpectriPy
Commit: 83b7e9eacdeb0d5750873d10432580a39eb6b5c0
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-06-13 07:36:05 +0200
Commit message:
Commit: 83b7e9eacdeb0d5750873d10432580a39eb6b5c0
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-06-13 07:36:05 +0200
Commit message:
ci: macOS install pyenv
Package: SpectriPy
Commit: d6067836e43c01dd00bb3953007c2b4c0d9d3607
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-06-13 07:26:25 +0200
Commit message:
Commit: d6067836e43c01dd00bb3953007c2b4c0d9d3607
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-06-13 07:26:25 +0200
Commit message:
ci: use reticulate to install Python on macOS
Package: SpectriPy
Commit: 70bd26ca649455daee01a48eea4c0283fbf3bfe6
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-06-12 17:18:29 +0200
Commit message:
Commit: 70bd26ca649455daee01a48eea4c0283fbf3bfe6
Author: jorainer <johannes.rainer@gmail.com>
Date: 2025-06-12 17:18:29 +0200
Commit message:
ci: only install required and imported packages
Package: stPipe
Commit: 6e85cda5cfbb0e2814841bd5e17df19e894cb14d
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-07-04 16:57:17 +1000
Commit message:
Commit: 6e85cda5cfbb0e2814841bd5e17df19e894cb14d
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-07-04 16:57:17 +1000
Commit message:
Remove std::cout.
Package: stPipe
Commit: ee9d4b5d1bbddc463e5408f9e6717e25d2921875
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-07-04 15:53:25 +1000
Commit message:
Commit: ee9d4b5d1bbddc463e5408f9e6717e25d2921875
Author: YangXuuu <xuyang1121wws@gmail.com>
Date: 2025-07-04 15:53:25 +1000
Commit message:
Modifiy codes based on the reviewer's comments.
Package: FlexAssays
Commit: a2ac72f175d6bce4127756c9a7351b44c83aa03e
Author: ycli1995 <ycli1995@outlook.com>
Date: 2025-07-04 11:48:18 +0800
Commit message:
Commit: a2ac72f175d6bce4127756c9a7351b44c83aa03e
Author: ycli1995 <ycli1995@outlook.com>
Date: 2025-07-04 11:48:18 +0800
Commit message:
Bump version to 0.99.5 * Fix ORCID
Package: FlexAssays
Commit: 787a068e01a7b1b409b5821b6723244f53bf84ef
Author: ycli1995 <ycli1995@outlook.com>
Date: 2025-07-04 11:34:36 +0800
Commit message:
Commit: 787a068e01a7b1b409b5821b6723244f53bf84ef
Author: ycli1995 <ycli1995@outlook.com>
Date: 2025-07-04 11:34:36 +0800
Commit message:
Bump version to 0.99.4 * Fix a stupid bug in DESCRIPTION
Package: FlexAssays
Commit: 67f071153be3475f4ee475422cb07e32c5628c6e
Author: ycli1995 <ycli1995@outlook.com>
Date: 2025-07-04 11:29:26 +0800
Commit message:
Commit: 67f071153be3475f4ee475422cb07e32c5628c6e
Author: ycli1995 <ycli1995@outlook.com>
Date: 2025-07-04 11:29:26 +0800
Commit message:
Bump version to 0.99.3 * Fix WARNING and some of NOTES for bioconductor checking
Package: FlexAssays
Commit: 12a79bae1eaacf89ce5b0e805a33bbb0edb534d4
Author: ycli1995 <ycli1995@outlook.com>
Date: 2025-07-04 10:48:16 +0800
Commit message:
Commit: 12a79bae1eaacf89ce5b0e805a33bbb0edb534d4
Author: ycli1995 <ycli1995@outlook.com>
Date: 2025-07-04 10:48:16 +0800
Commit message:
Bump version to 0.99.2 * fix ERROR for `SVT_SparseArray`
Package: FlexAssays
Commit: 8676b1d269649a6141a51e85eb133ea834eaee87
Author: ycli1995 <ycli1995@outlook.com>
Date: 2025-07-04 10:29:48 +0800
Commit message:
Commit: 8676b1d269649a6141a51e85eb133ea834eaee87
Author: ycli1995 <ycli1995@outlook.com>
Date: 2025-07-04 10:29:48 +0800
Commit message:
Bump version to 0.99.1
Package: XeniumIO
Commit: 94e988c170a91a576ddb9c32ef1d3d302019539d
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-03 16:58:11 -0400
Commit message:
Commit: 94e988c170a91a576ddb9c32ef1d3d302019539d
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-03 16:58:11 -0400
Commit message:
version bump 1.1.3
Package: XeniumIO
Commit: a7516775c1b54f9d0239de82f54171855763fb17
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-03 16:58:09 -0400
Commit message:
Commit: a7516775c1b54f9d0239de82f54171855763fb17
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-03 16:58:09 -0400
Commit message:
remove rtype arg from bfcdownload
Package: MetabolomicsPipeline
Commit: 7948947c62835a21b3f6974ec0c34d0bef5fc5dd
Author: joelparkeruofa <joelparker@arizona.edu>
Date: 2025-07-03 14:08:23 -0500
Commit message:
Commit: 7948947c62835a21b3f6974ec0c34d0bef5fc5dd
Author: joelparkeruofa <joelparker@arizona.edu>
Date: 2025-07-03 14:08:23 -0500
Commit message:
updating vignette
Package: MetabolomicsPipeline
Commit: e75a429dfa176a16ccde5d4e9e304c8a9a722849
Author: joelparkeruofa <joelparker@arizona.edu>
Date: 2025-07-03 14:05:55 -0500
Commit message:
Commit: e75a429dfa176a16ccde5d4e9e304c8a9a722849
Author: joelparkeruofa <joelparker@arizona.edu>
Date: 2025-07-03 14:05:55 -0500
Commit message:
allowing messages to be true
Package: MetabolomicsPipeline
Commit: 698efd2bae32a10ac8f872676ab4c3f070857ec7
Author: joelparkeruofa <joelparker@arizona.edu>
Date: 2025-07-03 13:58:52 -0500
Commit message:
Commit: 698efd2bae32a10ac8f872676ab4c3f070857ec7
Author: joelparkeruofa <joelparker@arizona.edu>
Date: 2025-07-03 13:58:52 -0500
Commit message:
updating documentation to not encourage users to use T/F
Package: MetabolomicsPipeline
Commit: 9ab52bb4437d9c3a6d09f7f3f959a88e892d8002
Author: joelparkeruofa <joelparker@arizona.edu>
Date: 2025-07-03 13:37:05 -0500
Commit message:
Commit: 9ab52bb4437d9c3a6d09f7f3f959a88e892d8002
Author: joelparkeruofa <joelparker@arizona.edu>
Date: 2025-07-03 13:37:05 -0500
Commit message:
adding magick dependency
Package: SingleMoleculeFootprinting
Commit: a208a9b73fdf38c6b81db3b018962a89bd74d98f
Author: GuidoBarzaghi <guidobarzaghi@gmail.com>
Date: 2025-07-03 17:39:57 +0200
Commit message:
Commit: a208a9b73fdf38c6b81db3b018962a89bd74d98f
Author: GuidoBarzaghi <guidobarzaghi@gmail.com>
Date: 2025-07-03 17:39:57 +0200
Commit message:
Addressed Reviewers #1 comments
Package: enrichmet
Commit: 9d5f20643a27bfb13b481fcbc5aa831fc350781d
Author: Yonatan2627 <yaayalew@gmail.com>
Date: 2025-07-03 10:52:57 -0400
Commit message:
Commit: 9d5f20643a27bfb13b481fcbc5aa831fc350781d
Author: Yonatan2627 <yaayalew@gmail.com>
Date: 2025-07-03 10:52:57 -0400
Commit message:
Bump version to 0.99.2
Package: DeconvoBuddies
Commit: 819ba70a8cee3a71cd9744299805321fd20daae7
Author: lahuuki <lahuuki@gmail.com>
Date: 2025-07-03 10:20:19 -0400
Commit message:
Commit: 819ba70a8cee3a71cd9744299805321fd20daae7
Author: lahuuki <lahuuki@gmail.com>
Date: 2025-07-03 10:20:19 -0400
Commit message:
Bump version
Package: DeconvoBuddies
Commit: 17f23d6a2cdc3e0b88b94943ef89586df723c43c
Author: lahuuki <lahuuki@gmail.com>
Date: 2025-07-03 10:19:06 -0400
Commit message:
Commit: 17f23d6a2cdc3e0b88b94943ef89586df723c43c
Author: lahuuki <lahuuki@gmail.com>
Date: 2025-07-03 10:19:06 -0400
Commit message:
Merge branch 'devel' of github.com:LieberInstitute/DeconvoBuddies into devel
Package: DeconvoBuddies
Commit: 274d52c512b70003d0342083ddbdc6bb1e6af396
Author: lahuuki <lahuuki@gmail.com>
Date: 2025-07-03 10:18:16 -0400
Commit message:
Commit: 274d52c512b70003d0342083ddbdc6bb1e6af396
Author: lahuuki <lahuuki@gmail.com>
Date: 2025-07-03 10:18:16 -0400
Commit message:
Add documentation for plot_type param
Package: DeconvoBuddies
Commit: 859b0be079704277480412acf74143a2e34c889a
Author: lahuuki <lahuuki@gmail.com>
Date: 2025-07-03 10:17:57 -0400
Commit message:
Commit: 859b0be079704277480412acf74143a2e34c889a
Author: lahuuki <lahuuki@gmail.com>
Date: 2025-07-03 10:17:57 -0400
Commit message:
Add option to plot a boxplot or violin plot with "plot_type"
Package: BgeeCall
Commit: bb6f2924480a3bddb8fc6791680a60130d33e1c3
Author: Julien Wollbrett <julien.wollbrett@unil.ch>
Date: 2025-07-03 14:50:17 +0200
Commit message:
Commit: bb6f2924480a3bddb8fc6791680a60130d33e1c3
Author: Julien Wollbrett <julien.wollbrett@unil.ch>
Date: 2025-07-03 14:50:17 +0200
Commit message:
update dependencies
Package: org.Hbacteriophora.eg.db
Commit: 36e89ee003bad7609ac6e2d292e208fc57828f01
Author: kabilanbio <kabilan151414@gmail.com>
Date: 2025-07-03 16:50:26 +0530
Commit message:
Commit: 36e89ee003bad7609ac6e2d292e208fc57828f01
Author: kabilanbio <kabilan151414@gmail.com>
Date: 2025-07-03 16:50:26 +0530
Commit message:
Resolve merge conflict in .gitignore and complete merge
Package: org.Hbacteriophora.eg.db
Commit: b0b5027e2aedd9cbaadcb5277aab807a993bde65
Author: KABILAN S <kabilan151414@gmail.com>
Date: 2025-07-03 14:58:26 +0530
Commit message:
Commit: b0b5027e2aedd9cbaadcb5277aab807a993bde65
Author: KABILAN S <kabilan151414@gmail.com>
Date: 2025-07-03 14:58:26 +0530
Commit message:
version bump
Package: org.Hbacteriophora.eg.db
Commit: a72c5b0a8b1c9245c5930b1d7aa021959274624e
Author: kabilanbio <kabilan151414@gmail.com>
Date: 2025-07-02 02:37:02 +0530
Commit message:
Commit: a72c5b0a8b1c9245c5930b1d7aa021959274624e
Author: kabilanbio <kabilan151414@gmail.com>
Date: 2025-07-02 02:37:02 +0530
Commit message:
latest_changes
Package: org.Hbacteriophora.eg.db
Commit: 17d9bbad48a3279f1df8ac3c6ef0e7da80d0ab1f
Author: kabilanbio <kabilan151414@gmail.com>
Date: 2025-07-01 18:00:30 +0530
Commit message:
Commit: 17d9bbad48a3279f1df8ac3c6ef0e7da80d0ab1f
Author: kabilanbio <kabilan151414@gmail.com>
Date: 2025-07-01 18:00:30 +0530
Commit message:
New Description
Package: org.Hbacteriophora.eg.db
Commit: f39f50d5340e835a6f081866df793a1be72d8165
Author: kabilanbio <kabilan151414@gmail.com>
Date: 2025-07-01 17:59:13 +0530
Commit message:
Commit: f39f50d5340e835a6f081866df793a1be72d8165
Author: kabilanbio <kabilan151414@gmail.com>
Date: 2025-07-01 17:59:13 +0530
Commit message:
Ignore RStudio project files
Package: org.Hbacteriophora.eg.db
Commit: 4851a38a997803200ce1ca459aa34d0ef065ea22
Author: kabilanbio <kabilan151414@gmail.com>
Date: 2025-07-01 15:28:11 +0530
Commit message:
Commit: 4851a38a997803200ce1ca459aa34d0ef065ea22
Author: kabilanbio <kabilan151414@gmail.com>
Date: 2025-07-01 15:28:11 +0530
Commit message:
Remove .Rproj file as per BiocCheck requirement
Package: org.Hbacteriophora.eg.db
Commit: 4c4f89d816c919202801c208f9b4dc2aa307313d
Author: kabilanbio <kabilan151414@gmail.com>
Date: 2025-07-03 16:37:05 +0530
Commit message:
Commit: 4c4f89d816c919202801c208f9b4dc2aa307313d
Author: kabilanbio <kabilan151414@gmail.com>
Date: 2025-07-03 16:37:05 +0530
Commit message:
Save changes to .gitignore and .Rproj before switching branches
Package: EventPointer
Commit: 0a34adb9b15d205e711f1fdc90c3481307d4a0be
Author: JFerrer-B <jafhernandez@tecnun.es>
Date: 2025-07-03 13:00:26 +0200
Commit message:
Commit: 0a34adb9b15d205e711f1fdc90c3481307d4a0be
Author: JFerrer-B <jafhernandez@tecnun.es>
Date: 2025-07-03 13:00:26 +0200
Commit message:
citation of new version of EventPointer
Package: cBioPortalData
Commit: 28ec34054b440f2e3d51e0bfda877917b67d25e8
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 16:34:20 -0400
Commit message:
Commit: 28ec34054b440f2e3d51e0bfda877917b67d25e8
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 16:34:20 -0400
Commit message:
version bump 2.21.4
Package: cBioPortalData
Commit: ce712d9693e181b7b86c3c93caef7a357e89f6a2
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 16:32:28 -0400
Commit message:
Commit: ce712d9693e181b7b86c3c93caef7a357e89f6a2
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 16:32:28 -0400
Commit message:
bump login action
Package: cBioPortalData
Commit: d065aef381883987cdb92a3c2bd28dffd03a22fe
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 16:32:08 -0400
Commit message:
Commit: d065aef381883987cdb92a3c2bd28dffd03a22fe
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 16:32:08 -0400
Commit message:
update CRAN binaries URL in Dockerfile
Package: cBioPortalData
Commit: a84e6e2c2d265efd059f5994ddef530b09464232
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 16:31:44 -0400
Commit message:
Commit: a84e6e2c2d265efd059f5994ddef530b09464232
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 16:31:44 -0400
Commit message:
clean up links in vignette
Package: cBioPortalData
Commit: 61893bedc7cc7728606339a22c0c71d288aab6a2
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 16:31:29 -0400
Commit message:
Commit: 61893bedc7cc7728606339a22c0c71d288aab6a2
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 16:31:29 -0400
Commit message:
clean up references in vignette
Package: cBioPortalData
Commit: a2370bc1772de89dad3da601cd6217ba4491f899
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 16:29:57 -0400
Commit message:
Commit: a2370bc1772de89dad3da601cd6217ba4491f899
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 16:29:57 -0400
Commit message:
clean up REFERENCES.bib
Package: cBioPortalData
Commit: 825ea188cf18ff2101c480e238afe04d7dcf96a5
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 16:29:41 -0400
Commit message:
Commit: 825ea188cf18ff2101c480e238afe04d7dcf96a5
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 16:29:41 -0400
Commit message:
add Zheng2016-au bib entry and reference in vignette, closes #83
Package: cBioPortalData
Commit: 1a647a03c56c43264d2338503e3b7f4b81175553
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-01 11:07:06 -0400
Commit message:
Commit: 1a647a03c56c43264d2338503e3b7f4b81175553
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-01 11:07:06 -0400
Commit message:
remove installdev.sh and use remotes
Package: cBioPortalData
Commit: 1080b31bd03e7684bd333183930c3bd7d14f64d8
Author: Marcel Ramos Pérez <LiNk-NY@users.noreply.github.com>
Date: 2025-07-01 10:40:34 -0400
Commit message:
Commit: 1080b31bd03e7684bd333183930c3bd7d14f64d8
Author: Marcel Ramos Pérez <LiNk-NY@users.noreply.github.com>
Date: 2025-07-01 10:40:34 -0400
Commit message:
update r-base in environment.yml
Package: cBioPortalData
Commit: a3d78083e46d47635c6f017bdee37d5c9a37e22d
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-01 10:44:37 -0400
Commit message:
Commit: a3d78083e46d47635c6f017bdee37d5c9a37e22d
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-01 10:44:37 -0400
Commit message:
update Dockerfile
Package: geomeTriD
Commit: 11f60487f9daf97026836daa5b531a6b34990df1
Author: Jianhong Ou <jou@JNXKY095H1.local>
Date: 2025-07-02 14:44:01 -0400
Commit message:
Commit: 11f60487f9daf97026836daa5b531a6b34990df1
Author: Jianhong Ou <jou@JNXKY095H1.local>
Date: 2025-07-02 14:44:01 -0400
Commit message:
view3dStructure for multiple sequences.
Package: TCGAutils
Commit: bafe4cea87ec74a66906299649b46814666bb0c3
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 12:15:08 -0400
Commit message:
Commit: bafe4cea87ec74a66906299649b46814666bb0c3
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 12:15:08 -0400
Commit message:
bump version 1.29.5
Package: TCGAutils
Commit: c507a4cbc51ca15af17c29df28614c5476cb7e63
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 12:10:13 -0400
Commit message:
Commit: c507a4cbc51ca15af17c29df28614c5476cb7e63
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 12:10:13 -0400
Commit message:
import genome and genome<- from Seqinfo
Package: TCGAutils
Commit: 372581c03a6f3065c2cf9d20bf39f907c806c129
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 12:09:54 -0400
Commit message:
Commit: 372581c03a6f3065c2cf9d20bf39f907c806c129
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 12:09:54 -0400
Commit message:
add GenomeInfoDb to vignette
Package: DropletUtils
Commit: 93a01ff974b64ee971375cc073b2dee70dd60e76
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2025-07-02 08:38:11 -0700
Commit message:
Commit: 93a01ff974b64ee971375cc073b2dee70dd60e76
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2025-07-02 08:38:11 -0700
Commit message:
Avoid ODR violations from copy-pasted struct definition. Interesting that this wasn't picked up in the ~5 years that it was introduced, but I guess that newer compilers are less cavalier about it.
Package: TCGAutils
Commit: 260183dc4bdce6cd0fc0fa401f22ce448b2436c7
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 11:24:46 -0400
Commit message:
Commit: 260183dc4bdce6cd0fc0fa401f22ce448b2436c7
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 11:24:46 -0400
Commit message:
version bump 1.29.4
Package: TCGAutils
Commit: 40a570c8fee209f9e4831e01cb2cd000bca2f718
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 11:24:44 -0400
Commit message:
Commit: 40a570c8fee209f9e4831e01cb2cd000bca2f718
Author: LiNk-NY <marcel.ramos@sph.cuny.edu>
Date: 2025-07-02 11:24:44 -0400
Commit message:
add package argument to lifeCycle
Package: enrichmet
Commit: 2416ebe04789a155182143c42531dfde80cdec9f
Author: Yonatan2627 <yaayalew@gmail.com>
Date: 2025-07-02 11:15:15 -0400
Commit message:
Commit: 2416ebe04789a155182143c42531dfde80cdec9f
Author: Yonatan2627 <yaayalew@gmail.com>
Date: 2025-07-02 11:15:15 -0400
Commit message:
Bump version to 0.99.1
Package: BiocBook
Commit: 217486d7bb8a174373f7f0f3c527c580fd93d7d1
Author: js2264 <jacquesserizay@gmail.com>
Date: 2025-07-02 15:26:44 +0200
Commit message:
Commit: 217486d7bb8a174373f7f0f3c527c580fd93d7d1
Author: js2264 <jacquesserizay@gmail.com>
Date: 2025-07-02 15:26:44 +0200
Commit message:
fix: switch to pak::pkg_name_check()
Package: BiocBook
Commit: 937ce73339158eee823190757288b90250649dee
Author: js2264 <jacquesserizay@gmail.com>
Date: 2025-07-02 14:16:41 +0200
Commit message:
Commit: 937ce73339158eee823190757288b90250649dee
Author: js2264 <jacquesserizay@gmail.com>
Date: 2025-07-02 14:16:41 +0200
Commit message:
fix: unique names for book in examples
Package: msqrob2
Commit: 34cf9b793ef140b74ead1f19b52dc52e7063dda2
Author: cvanderaa <vanderaa.christophe@gmail.com>
Date: 2025-06-30 17:30:20 +0200
Commit message:
Commit: 34cf9b793ef140b74ead1f19b52dc52e7063dda2
Author: cvanderaa <vanderaa.christophe@gmail.com>
Date: 2025-06-30 17:30:20 +0200
Commit message:
GHA checking using bioc devel instead of release
Package: msqrob2
Commit: 208736c143a809ed833bf7e93271edff34ffce43
Author: cvanderaa <vanderaa.christophe@gmail.com>
Date: 2025-06-30 17:14:07 +0200
Commit message:
Commit: 208736c143a809ed833bf7e93271edff34ffce43
Author: cvanderaa <vanderaa.christophe@gmail.com>
Date: 2025-06-30 17:14:07 +0200
Commit message:
version bump
Package: msqrob2
Commit: a941e9cded719794de4227ae0a898483dc779cc4
Author: cvanderaa <vanderaa.christophe@gmail.com>
Date: 2025-06-30 17:12:24 +0200
Commit message:
Commit: a941e9cded719794de4227ae0a898483dc779cc4
Author: cvanderaa <vanderaa.christophe@gmail.com>
Date: 2025-06-30 17:12:24 +0200
Commit message:
Fixed NEWS file
Package: msqrob2
Commit: e0e4168335ce82d5d522f5b60b67d9af4e37044f
Author: cvanderaa <vanderaa.christophe@gmail.com>
Date: 2025-06-30 17:12:12 +0200
Commit message:
Commit: e0e4168335ce82d5d522f5b60b67d9af4e37044f
Author: cvanderaa <vanderaa.christophe@gmail.com>
Date: 2025-06-30 17:12:12 +0200
Commit message:
Fixed vignette upon renaming of longFormat to longForm
Package: msqrob2
Commit: 7da63776bd9ff70efd4274b14ea2c33527ed4eb3
Author: cvanderaa <vanderaa.christophe@gmail.com>
Date: 2025-06-30 16:48:13 +0200
Commit message:
Commit: 7da63776bd9ff70efd4274b14ea2c33527ed4eb3
Author: cvanderaa <vanderaa.christophe@gmail.com>
Date: 2025-06-30 16:48:13 +0200
Commit message:
Merge branch 'devel' of git.bioconductor.org:packages/msqrob2
Package: msqrob2
Commit: 2edcd87818c5326f99f095d681c080a7e52929b9
Author: cvanderaa <43441105+cvanderaa@users.noreply.github.com>
Date: 2025-06-18 15:19:38 +0200
Commit message:
Commit: 2edcd87818c5326f99f095d681c080a7e52929b9
Author: cvanderaa <43441105+cvanderaa@users.noreply.github.com>
Date: 2025-06-18 15:19:38 +0200
Commit message:
Merge pull request #62 from statOmics/ISSUE_59 Issue 59
Package: msqrob2
Commit: 83338f7ff159199ce20a0d1ca48904abf4aa4a98
Author: cvanderaa <43441105+cvanderaa@users.noreply.github.com>
Date: 2025-05-28 16:17:32 +0200
Commit message:
Commit: 83338f7ff159199ce20a0d1ca48904abf4aa4a98
Author: cvanderaa <43441105+cvanderaa@users.noreply.github.com>
Date: 2025-05-28 16:17:32 +0200
Commit message:
Merge pull request #70 from alyst/fix_top_features Fix topFeatures()
Package: msqrob2
Commit: c7fff92c34b46f69006b7fec5ce2ea58e3e78f9f
Author: Alexey Stukalov <astukalol@seer.bio>
Date: 2025-05-26 14:54:33 -0700
Commit message:
Commit: c7fff92c34b46f69006b7fec5ce2ea58e3e78f9f
Author: Alexey Stukalov <astukalol@seer.bio>
Date: 2025-05-26 14:54:33 -0700
Commit message:
topFeatures(): make sure contrast is a matrix
Package: msqrob2
Commit: f216c76077afbfe6c672f134e73ad8935c26cdc3
Author: Alexey Stukalov <astukalol@seer.bio>
Date: 2025-04-04 18:41:08 -0700
Commit message:
Commit: f216c76077afbfe6c672f134e73ad8935c26cdc3
Author: Alexey Stukalov <astukalol@seer.bio>
Date: 2025-04-04 18:41:08 -0700
Commit message:
topFeatures(): cleanup filtering and sorting
Package: msqrob2
Commit: 3aea888a9be604b2fb02f482de5799c86f500ec7
Author: Alexey Stukalov <astukalol@seer.bio>
Date: 2025-04-04 17:37:05 -0700
Commit message:
Commit: 3aea888a9be604b2fb02f482de5799c86f500ec7
Author: Alexey Stukalov <astukalol@seer.bio>
Date: 2025-04-04 17:37:05 -0700
Commit message:
topFeatures: fix contrast matrix cleaning
Package: msqrob2
Commit: ae55b186a5878e60a871ae55895c44ebe03bd2ac
Author: StijnVandenbulcke <vandenbulcke.stijn@gmail.com>
Date: 2024-05-07 16:54:41 +0200
Commit message:
Commit: ae55b186a5878e60a871ae55895c44ebe03bd2ac
Author: StijnVandenbulcke <vandenbulcke.stijn@gmail.com>
Date: 2024-05-07 16:54:41 +0200
Commit message:
Forgot a comma
Package: msqrob2
Commit: e47b2d2e49cd0fe7b4c0ef7597d534574db9475b
Author: StijnVandenbulcke <vandenbulcke.stijn@gmail.com>
Date: 2024-05-07 16:52:08 +0200
Commit message:
Commit: e47b2d2e49cd0fe7b4c0ef7597d534574db9475b
Author: StijnVandenbulcke <vandenbulcke.stijn@gmail.com>
Date: 2024-05-07 16:52:08 +0200
Commit message:
Fixed incorrect subsetting related to the coldata
Package: geomeTriD
Commit: 33b79dd7126a58d0c0dbda6a6e5d58d7872cd039
Author: Jianhong Ou <jou@JNXKY095H1.local>
Date: 2025-07-02 08:45:53 -0400
Commit message:
Commit: 33b79dd7126a58d0c0dbda6a6e5d58d7872cd039
Author: Jianhong Ou <jou@JNXKY095H1.local>
Date: 2025-07-02 08:45:53 -0400
Commit message:
link documentaions.
Package: geomeTriD
Commit: 6576fcafeb3188ec14fef0410cde06b8f8ca4501
Author: Jianhong Ou <jou@JNXKY095H1.local>
Date: 2025-07-02 08:19:17 -0400
Commit message:
Commit: 6576fcafeb3188ec14fef0410cde06b8f8ca4501
Author: Jianhong Ou <jou@JNXKY095H1.local>
Date: 2025-07-02 08:19:17 -0400
Commit message:
add library GenomeInfoDb to vignette.
Package: MSstats
Commit: 5e7372e74bae59bec70317918e3490ac44390981
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2025-07-02 14:08:53 +0200
Commit message:
Commit: 5e7372e74bae59bec70317918e3490ac44390981
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2025-07-02 14:08:53 +0200
Commit message:
version bump
Package: MSstats
Commit: a2410173f2ce25012b2956f49b697aae9f3c549d
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2025-07-02 14:03:44 +0200
Commit message:
Commit: a2410173f2ce25012b2956f49b697aae9f3c549d
Author: Mateusz Staniak <mtst@mstaniak.pl>
Date: 2025-07-02 14:03:44 +0200
Commit message:
Merge branch 'devel' of git.bioconductor.org:packages/MSstats into devel
Package: MSstats
Commit: 46a55e0ddcbbc77b4e41ca65f56c8e5b7df33c66
Author: tonywu1999 <wu.anthon@northeastern.edu>
Date: 2025-07-01 18:48:00 -0400
Commit message:
Commit: 46a55e0ddcbbc77b4e41ca65f56c8e5b7df33c66
Author: tonywu1999 <wu.anthon@northeastern.edu>
Date: 2025-07-01 18:48:00 -0400
Commit message:
fix(dataProcessPlots): Convert pixels to inches for pdf plots (#167)
Package: MSstats
Commit: c9657713a6d3f976cd8fd3db2ee247ae00ab99df
Author: tonywu1999 <wu.anthon@northeastern.edu>
Date: 2025-07-01 18:36:03 -0400
Commit message:
Commit: c9657713a6d3f976cd8fd3db2ee247ae00ab99df
Author: tonywu1999 <wu.anthon@northeastern.edu>
Date: 2025-07-01 18:36:03 -0400
Commit message:
fix(dataProcess): Fix dataProcess to run more efficiently with data.table 1.17 upgrade (#166)
Package: MSstats
Commit: f7e0733d9ec6cdd1b973eb1c20f8df0b1bab56b8
Author: tonywu1999 <wu.anthon@northeastern.edu>
Date: 2025-06-19 12:17:20 -0400
Commit message:
Commit: f7e0733d9ec6cdd1b973eb1c20f8df0b1bab56b8
Author: tonywu1999 <wu.anthon@northeastern.edu>
Date: 2025-06-19 12:17:20 -0400
Commit message:
Fix data.table bug in .logMissingness after data.table 1.17 update (#164)
Package: MSstats
Commit: b5d79e832a0ea1ea1f36263259e4f34ff7702ff7
Author: tonywu1999 <wu.anthon@northeastern.edu>
Date: 2025-05-23 15:18:14 -0400
Commit message:
Commit: b5d79e832a0ea1ea1f36263259e4f34ff7702ff7
Author: tonywu1999 <wu.anthon@northeastern.edu>
Date: 2025-05-23 15:18:14 -0400
Commit message:
fix(groupComparisonPlots): Fix volcano plot coloring (#160)
Package: biosigner
Commit: 3022d1b313767cd0b112a0ece83ebbc6a9b02ff1
Author: THEVENOT Etienne <ET207099@intra.cea.fr>
Date: 2025-07-02 12:13:01 +0200
Commit message:
Commit: 3022d1b313767cd0b112a0ece83ebbc6a9b02ff1
Author: THEVENOT Etienne <ET207099@intra.cea.fr>
Date: 2025-07-02 12:13:01 +0200
Commit message:
v1.37.4: minor modification: minor documentation update
Package: dandelionR
Commit: 6ecd62136ffe01ba268a538a3dfa48376c0c8612
Author: Zewen Kelvin Tuong <z.tuong@uq.edu.au>
Date: 2025-07-02 12:26:51 +1000
Commit message:
Commit: 6ecd62136ffe01ba268a538a3dfa48376c0c8612
Author: Zewen Kelvin Tuong <z.tuong@uq.edu.au>
Date: 2025-07-02 12:26:51 +1000
Commit message:
Merge branch 'main' into devel
Package: dandelionR
Commit: 4d277fe7c5a19d0d34051232d5c9075aec9e5436
Author: Zewen Kelvin Tuong <z.tuong@uq.edu.au>
Date: 2025-07-02 12:24:27 +1000
Commit message:
Commit: 4d277fe7c5a19d0d34051232d5c9075aec9e5436
Author: Zewen Kelvin Tuong <z.tuong@uq.edu.au>
Date: 2025-07-02 12:24:27 +1000
Commit message:
add citation to publication (#71) * add citation to publication * formatting changes
Package: dandelionR
Commit: b519637a9c5dc301c004bec2cee6054c83a05d51
Author: Zewen Kelvin Tuong <z.tuong@uq.edu.au>
Date: 2025-06-16 17:56:59 +1000
Commit message:
Commit: b519637a9c5dc301c004bec2cee6054c83a05d51
Author: Zewen Kelvin Tuong <z.tuong@uq.edu.au>
Date: 2025-06-16 17:56:59 +1000
Commit message:
Devel (#70) * bump x.y.z version to even y prior to creation of RELEASE_3_21 branch * bump x.y.z version to odd y following creation of RELEASE_3_21 branch * Update DESCRIPTION --------- Co-authored-by: A Wokaty <andres.wokaty@sph.cuny.edu>
Package: HiCPotts
Commit: 0c0550ee6bf431e2697a3a0c639e0325039a1e13
Author: Itunu <hitunes4@gmail.com>
Date: 2025-07-02 00:10:48 +0100
Commit message:
Commit: 0c0550ee6bf431e2697a3a0c639e0325039a1e13
Author: Itunu <hitunes4@gmail.com>
Date: 2025-07-02 00:10:48 +0100
Commit message:
Remove data-raw folder, update DESCRIPTION
Package: GenomicTuples
Commit: ef574dc73cf466a1a0d128c68135e8ce41ca4e19
Author: Peter Hickey <peter.hickey@gmail.com>
Date: 2025-07-02 08:51:29 +1000
Commit message:
Commit: ef574dc73cf466a1a0d128c68135e8ce41ca4e19
Author: Peter Hickey <peter.hickey@gmail.com>
Date: 2025-07-02 08:51:29 +1000
Commit message:
Fix 'R CMD check' NOTE about erroneous use of \itemize This fixes two occurences in the man pages where \describe needed to be used instead of \itemize. Also sync 'Orentation and strand' section with that from GenomicRanges
Package: GenomicTuples
Commit: 9ba593f98ba88a253cec38558bd609a14c5a8d51
Author: Peter Hickey <peter.hickey@gmail.com>
Date: 2025-07-02 08:56:16 +1000
Commit message:
Commit: 9ba593f98ba88a253cec38558bd609a14c5a8d51
Author: Peter Hickey <peter.hickey@gmail.com>
Date: 2025-07-02 08:56:16 +1000
Commit message:
Update DESCRIPTION for commit 'Depends on Seqinfo instead of GenomeInfoDb' and version bump
Package: GenomicTuples
Commit: bbd4f12d2d8ed8fb0fe34a63bb7026f6d3cd0fca
Author: Peter Hickey <peter.hickey@gmail.com>
Date: 2025-07-02 08:55:23 +1000
Commit message:
Commit: bbd4f12d2d8ed8fb0fe34a63bb7026f6d3cd0fca
Author: Peter Hickey <peter.hickey@gmail.com>
Date: 2025-07-02 08:55:23 +1000
Commit message:
Minor tweak to tests - Rename seqinfo to si to avoid clashes - Explicitly call GenomeInfoDb::seqlevelsStyle() where required
Package: GenomicTuples
Commit: d1c32b690c15f10e1717bc36bbf942d0c73ef565
Author: Peter Hickey <peter.hickey@gmail.com>
Date: 2025-07-02 08:54:14 +1000
Commit message:
Commit: d1c32b690c15f10e1717bc36bbf942d0c73ef565
Author: Peter Hickey <peter.hickey@gmail.com>
Date: 2025-07-02 08:54:14 +1000
Commit message:
Update package-level documentation
Package: GenomicTuples
Commit: baa94f58dadb02c402d88f503cfe6213a2baca7a
Author: Peter Hickey <peter.hickey@gmail.com>
Date: 2025-07-02 08:53:24 +1000
Commit message:
Commit: baa94f58dadb02c402d88f503cfe6213a2baca7a
Author: Peter Hickey <peter.hickey@gmail.com>
Date: 2025-07-02 08:53:24 +1000
Commit message:
Depends on Seqinfo instead of GenomeInfoDb
Package: HiCPotts
Commit: 745552cb098422267e355a49db7737c70e09c048
Author: Itunu <hitunes4@gmail.com>
Date: 2025-07-01 23:48:43 +0100
Commit message:
Commit: 745552cb098422267e355a49db7737c70e09c048
Author: Itunu <hitunes4@gmail.com>
Date: 2025-07-01 23:48:43 +0100
Commit message:
Add test_data2.R to data-raw, update DESCRIPTION
Package: HiCPotts
Commit: a4f1ec59c0c307ed6f8253b1b5ff1e59aefbd692
Author: Itunu <hitunes4@gmail.com>
Date: 2025-07-01 23:18:21 +0100
Commit message:
Commit: a4f1ec59c0c307ed6f8253b1b5ff1e59aefbd692
Author: Itunu <hitunes4@gmail.com>
Date: 2025-07-01 23:18:21 +0100
Commit message:
Update package files
Package: gDRutils
Commit: 086a08b8039fac86345656e7e232c7cc5c6c05cd
Author: Bartek <32614650+bczech@users.noreply.github.com>
Date: 2025-07-01 22:53:24 +0200
Commit message:
Commit: 086a08b8039fac86345656e7e232c7cc5c6c05cd
Author: Bartek <32614650+bczech@users.noreply.github.com>
Date: 2025-07-01 22:53:24 +0200
Commit message:
Merge pull request #167 from gdrplatform/GDR-2908 Gdr 2908
Package: gDRutils
Commit: f85cf04a8709f302cbb65fcd5f449482768aa227
Author: Bartek Czech <bartosz.w.czech@gmail.com>
Date: 2025-07-01 21:41:54 +0200
Commit message:
Commit: f85cf04a8709f302cbb65fcd5f449482768aa227
Author: Bartek Czech <bartosz.w.czech@gmail.com>
Date: 2025-07-01 21:41:54 +0200
Commit message:
refactor: update unit tests
Package: gDRutils
Commit: e3c431c54adf1feb36d3b72888c38c1eb03be5aa
Author: Bartek Czech <bartosz.w.czech@gmail.com>
Date: 2025-07-01 20:29:16 +0200
Commit message:
Commit: e3c431c54adf1feb36d3b72888c38c1eb03be5aa
Author: Bartek Czech <bartosz.w.czech@gmail.com>
Date: 2025-07-01 20:29:16 +0200
Commit message:
fix: update var name (II)
Package: gDRutils
Commit: 399446d8fa2ba7d5391cdc034a00a680a089ece0
Author: Bartek Czech <bartosz.w.czech@gmail.com>
Date: 2025-07-01 14:03:57 +0200
Commit message:
Commit: 399446d8fa2ba7d5391cdc034a00a680a089ece0
Author: Bartek Czech <bartosz.w.czech@gmail.com>
Date: 2025-07-01 14:03:57 +0200
Commit message:
fix: update var
Package: gDRutils
Commit: fba15d57e786bf02a01a3c16cf5507539fc45895
Author: Bartek Czech <bartosz.w.czech@gmail.com>
Date: 2025-07-01 12:33:36 +0200
Commit message:
Commit: fba15d57e786bf02a01a3c16cf5507539fc45895
Author: Bartek Czech <bartosz.w.czech@gmail.com>
Date: 2025-07-01 12:33:36 +0200
Commit message:
chore: bump version and update NEWS.md
Package: gDRutils
Commit: ec44211ba07a23ab0652f8f07da918da17633bc1
Author: Bartek Czech <bartosz.w.czech@gmail.com>
Date: 2025-07-01 12:33:32 +0200
Commit message:
Commit: ec44211ba07a23ab0652f8f07da918da17633bc1
Author: Bartek Czech <bartosz.w.czech@gmail.com>
Date: 2025-07-01 12:33:32 +0200
Commit message:
test: add unit tests
Package: gDRutils
Commit: f9617eb9e3d8625839d5e9d027b305cb0df9cf8b
Author: Bartek Czech <bartosz.w.czech@gmail.com>
Date: 2025-07-01 12:33:21 +0200
Commit message:
Commit: f9617eb9e3d8625839d5e9d027b305cb0df9cf8b
Author: Bartek Czech <bartosz.w.czech@gmail.com>
Date: 2025-07-01 12:33:21 +0200
Commit message:
doc: reoxygenate
Package: gDRutils
Commit: d30e98c23e9051f20d792024f3936396f9409714
Author: Bartek Czech <bartosz.w.czech@gmail.com>
Date: 2025-07-01 12:33:04 +0200
Commit message:
Commit: d30e98c23e9051f20d792024f3936396f9409714
Author: Bartek Czech <bartosz.w.czech@gmail.com>
Date: 2025-07-01 12:33:04 +0200
Commit message:
refactor: to properly average data
Package: gDRutils
Commit: b720986afd36c6e94a318de8f6ac8e32624902cc
Author: Bartek Czech <bartosz.w.czech@gmail.com>
Date: 2025-06-30 12:19:02 +0200
Commit message:
Commit: b720986afd36c6e94a318de8f6ac8e32624902cc
Author: Bartek Czech <bartosz.w.czech@gmail.com>
Date: 2025-06-30 12:19:02 +0200
Commit message:
refactor: average biological replicates
Package: MetaDICT
Commit: d9e078e1bbf546b147ac169796622495442093da
Author: Bo Yuan <boyuan5@illinois.edu>
Date: 2025-07-01 15:19:03 -0500
Commit message:
Commit: d9e078e1bbf546b147ac169796622495442093da
Author: Bo Yuan <boyuan5@illinois.edu>
Date: 2025-07-01 15:19:03 -0500
Commit message:
Subscribe to the Bioc-devel mailing list
Package: singleCellTK
Commit: 565145a1d21527a6bed0fe88a9f4218990282e79
Author: Josh Campbell <joshua-d-campbell@gmail.com>
Date: 2025-07-01 15:36:15 -0400
Commit message:
Commit: 565145a1d21527a6bed0fe88a9f4218990282e79
Author: Josh Campbell <joshua-d-campbell@gmail.com>
Date: 2025-07-01 15:36:15 -0400
Commit message:
version bump
Package: singleCellTK
Commit: 2920281499b1fc41f9c62dbb15316b8b5bb560e6
Author: Josh Campbell <joshua-d-campbell@gmail.com>
Date: 2025-07-01 15:33:49 -0400
Commit message:
Commit: 2920281499b1fc41f9c62dbb15316b8b5bb560e6
Author: Josh Campbell <joshua-d-campbell@gmail.com>
Date: 2025-07-01 15:33:49 -0400
Commit message:
Merge remote-tracking branch 'compbiomed/devel' into devel
Package: singleCellTK
Commit: ae7067b61f9e99dc86a2ee81b6f9d2cc2dbe923a
Author: Joshua D. Campbell <joshua.d.campbell@gmail.com>
Date: 2025-06-23 15:39:21 -0400
Commit message:
Commit: ae7067b61f9e99dc86a2ee81b6f9d2cc2dbe923a
Author: Joshua D. Campbell <joshua.d.campbell@gmail.com>
Date: 2025-06-23 15:39:21 -0400
Commit message:
Merge pull request #787 from salzcamino/master Update runEnrichR examples
Package: singleCellTK
Commit: f92532527818fa77a6752d480f34ff9a9f3ff6a6
Author: salzcamino <salamha@bu.edu>
Date: 2025-06-23 10:16:35 -0400
Commit message:
Commit: f92532527818fa77a6752d480f34ff9a9f3ff6a6
Author: salzcamino <salamha@bu.edu>
Date: 2025-06-23 10:16:35 -0400
Commit message:
update runEnrichR examples
Package: singleCellTK
Commit: 2a13bfd34437798c4595f4eaa716543c81d2100a
Author: Salam AlAbdullatif <salamha@bu.edu>
Date: 2025-05-14 11:23:33 -0400
Commit message:
Commit: 2a13bfd34437798c4595f4eaa716543c81d2100a
Author: Salam AlAbdullatif <salamha@bu.edu>
Date: 2025-05-14 11:23:33 -0400
Commit message:
Merge branch 'compbiomed:master' into master
Package: singleCellTK
Commit: 730a5f913b9d4b75fadd3af0ab51546ef23e6271
Author: Salam AlAbdullatif <salamha@bu.edu>
Date: 2025-04-23 10:41:52 -0400
Commit message:
Commit: 730a5f913b9d4b75fadd3af0ab51546ef23e6271
Author: Salam AlAbdullatif <salamha@bu.edu>
Date: 2025-04-23 10:41:52 -0400
Commit message:
Merge pull request #48 from compbiomed/devel Devel
Package: enrichmet
Commit: fd8427715b722eb239d9cead5b73bd4751267391
Author: Yonatan2627 <yaayalew@gmail.com>
Date: 2025-07-01 13:28:58 -0400
Commit message:
Commit: fd8427715b722eb239d9cead5b73bd4751267391
Author: Yonatan2627 <yaayalew@gmail.com>
Date: 2025-07-01 13:28:58 -0400
Commit message:
fixing errors
Package: geomeTriD
Commit: 8ecb09dd126b4d8fad1a38c1f88f9399959c7e50
Author: Jianhong Ou <jou@JNXKY095H1.local>
Date: 2025-07-01 14:51:56 -0400
Commit message:
Commit: 8ecb09dd126b4d8fad1a38c1f88f9399959c7e50
Author: Jianhong Ou <jou@JNXKY095H1.local>
Date: 2025-07-01 14:51:56 -0400
Commit message:
add scale bar in threejsViewer
Package: CPSM
Commit: 056cbbb4c438bef1aa58e3445314b338d3315c9b
Author: Harpreet Kaur <hks04180@gmail.com>
Date: 2025-07-01 13:56:27 -0400
Commit message:
Commit: 056cbbb4c438bef1aa58e3445314b338d3315c9b
Author: Harpreet Kaur <hks04180@gmail.com>
Date: 2025-07-01 13:56:27 -0400
Commit message:
Update NEWS and vignette
Package: DNEA
Commit: d5111338e5b5a575d3b9c5a4253a800b1d748b78
Author: chrispatsalis <patsalis@umich.edu>
Date: 2025-07-01 13:19:29 -0400
Commit message:
Commit: d5111338e5b5a575d3b9c5a4253a800b1d748b78
Author: chrispatsalis <patsalis@umich.edu>
Date: 2025-07-01 13:19:29 -0400
Commit message:
Bump version to force build
Package: TFEA.ChIP
Commit: 1429bc753fcfa26a06efd867bde0833724b9936c
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-07-01 17:27:57 +0200
Commit message:
Commit: 1429bc753fcfa26a06efd867bde0833724b9936c
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-07-01 17:27:57 +0200
Commit message:
Fix version bump: 1.29.2
Package: TFEA.ChIP
Commit: 041f875b5d7594e9b6ec285f68ab06c98b4c81f8
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-07-01 17:24:28 +0200
Commit message:
Commit: 041f875b5d7594e9b6ec285f68ab06c98b4c81f8
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-07-01 17:24:28 +0200
Commit message:
Merge branch 'master' into devel
Package: TFEA.ChIP
Commit: 36f37d6bdfbf7dc94155881f755c58f308953b25
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-07-01 17:03:15 +0200
Commit message:
Commit: 36f37d6bdfbf7dc94155881f755c58f308953b25
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-07-01 17:03:15 +0200
Commit message:
add new Rd
Package: TFEA.ChIP
Commit: e8a4e1b707669bd85d5f91fe11b18edd6c4ebdd0
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-07-01 14:56:26 +0200
Commit message:
Commit: e8a4e1b707669bd85d5f91fe11b18edd6c4ebdd0
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-07-01 14:56:26 +0200
Commit message:
Merge upstream/master into local master, resolved conflicts
Package: TFEA.ChIP
Commit: fea1abeffd5481b1ac99b6e1ccadf91abe70d63b
Author: yberda <76262548+yberda@users.noreply.github.com>
Date: 2025-07-01 13:24:41 +0200
Commit message:
Commit: fea1abeffd5481b1ac99b6e1ccadf91abe70d63b
Author: yberda <76262548+yberda@users.noreply.github.com>
Date: 2025-07-01 13:24:41 +0200
Commit message:
deleted file
Package: TFEA.ChIP
Commit: 40b26a1f4618f3bfb786f5c88a8f678332be822e
Author: yberda <76262548+yberda@users.noreply.github.com>
Date: 2025-07-01 13:23:47 +0200
Commit message:
Commit: 40b26a1f4618f3bfb786f5c88a8f678332be822e
Author: yberda <76262548+yberda@users.noreply.github.com>
Date: 2025-07-01 13:23:47 +0200
Commit message:
Clean update: NEWS and DESCRIPTION for v1.19.2 (#6)
Package: TFEA.ChIP
Commit: af284297aed9825dc91b989125cdba63c061faf3
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-07-01 12:53:56 +0200
Commit message:
Commit: af284297aed9825dc91b989125cdba63c061faf3
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-07-01 12:53:56 +0200
Commit message:
uodated vignette and DESCRITPION
Package: TFEA.ChIP
Commit: 6966f5cbbee7585a268452b45ccc4c46c18c86df
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-07-01 12:37:02 +0200
Commit message:
Commit: 6966f5cbbee7585a268452b45ccc4c46c18c86df
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-07-01 12:37:02 +0200
Commit message:
compress ChIPDB
Package: TFEA.ChIP
Commit: 4a7b7cdf70bef1565e77924edf7c5c1ed38ebd11
Author: yberda <76262548+yberda@users.noreply.github.com>
Date: 2025-07-01 12:09:11 +0200
Commit message:
Commit: 4a7b7cdf70bef1565e77924edf7c5c1ed38ebd11
Author: yberda <76262548+yberda@users.noreply.github.com>
Date: 2025-07-01 12:09:11 +0200
Commit message:
TFEA.ChIP v1.19.2: Meta-analysis, wrapper workflow, database update, and performance enhancements (#4) * Added new functionalities, updated regulatory data, and improved performance * version bump * Extended TFBS, missing else & mouse translation - Extended TFBS database with 63 new ChIP-Seq experiment added. - Missing else condition in txt2GR corrected. - mouse (mus musculus) gene ID translation to human Entrez Gene IDs implemented. * Update DESCRIPTION version bump * namespace update * version bump * substitute for loops with applys, expand documentation, and other corrections * minor bug in plot_RES solved * R version dependency * minor bug in plot_RES * TF gene symbols updated * plot_ES bug fixed * version * plot LOR instead of OR * adds metadata to getCMstats function * GSEA_run compures weighted score, output tables include metadata, plot_CM plots log(OR) * bug at plotting log(OR) solved * bug in GSEA_EnrichmentScore solved * getCMstats modified to include distances * Solved bug in GR2tfbs_db Now ChIP-Seqs that don't have any peaks assigned to genes are eliminated from the output list. * Update All-functions.R * plot_CM function modified to accept new table containing log2OR and log10.adj.pval columns * Bug in GSEA_run fixed * database updated, includes distant TFBS, all documentation and test units updated * update example datasets and its documentation * example data updated * correction in dataset documentation * man pages updated * version bump * Unit test error solved. Checking if biomaRt host is available before translating mouse IDs * bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch * bump x.y.z versions to odd y after creation of RELEASE_3_7 branch * bug in GR2tfbs solved (extracting ChIP-seq IDs) * Added mouse to mouse ID translation and updated database * bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch * bump x.y.z versions to odd y after creation of RELEASE_3_8 branch * update: TF ranking & faster GSEA_run * Warning solving: extra man page removed * bug solved in get_chip_index (encode ChIP selection) * multiple boolean variable error solved * multiple boolean variable error solved * multiple boolean variable error solved * Bug in preproccessInputData solved (DESeqResults to data.frame) * New gene-TR database. See NEWS file * New gene-TR database. See NEWS file * tests updated * bug in GeneID2entrez examples solved * testing issue in test_contingency_matrix solved * bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch * bump x.y.z versions to odd y after creation of RELEASE_3_9 branch * trimming whitespaces in gene IDs in preprocessInputData() * trimming whitespaces in gene IDs in preprocessInputData() * bug fix in GeneID2entrez: toupper() call moved to h2h section * version bump * bug fix in preprocessInputData: toupper() call added to h2h section * error in GeneID2entrez solved * Citation file added * bump x.y.z version to even y prior to creation of RELEASE_3_10 branch * bump x.y.z version to odd y after creation of RELEASE_3_10 branch * bump x.y.z version to even y prior to creation of RELEASE_3_11 branch * bump x.y.z version to odd y following creation of RELEASE_3_11 branch * bump x.y.z version to even y prior to creation of RELEASE_3_12 branch * bump x.y.z version to odd y following creation of RELEASE_3_12 branch * Simplified plotting functions and data objects stored * bump x.y.z version to even y prior to creation of RELEASE_3_13 branch * bump x.y.z version to odd y following creation of RELEASE_3_13 branch * bump x.y.z version to even y prior to creation of RELEASE_3_14 branch * bump x.y.z version to odd y following creation of RELEASE_3_14 branch * Pass serialized S4 instances thru updateObject() * Version 2.1.1 upgrade * Corrected version number * Corrected version number * patched error on BioC builder * Version bump * updated vignette * updated vignette * upgraded version * new changes * updated vignette and db * changed vignette and fxs * changed NEWS * Delete vignettes/.Rhistory --------- Co-authored-by: Laura Puente-Santamaria <lpsantamaria@iib.uam.es> Co-authored-by: LauraPS1 <lpsantamaria@iib.upm.es> Co-authored-by: luis <lpeso@iib.uam.es> Co-authored-by: vobencha <valerie.obenchain@roswellpark.org> Co-authored-by: vobencha <vobencha@gmail.com> Co-authored-by: Nitesh Turaga <nitesh.turaga@gmail.com> Co-authored-by: Hervé Pagès <hpages.on.github@gmail.com>
Package: TFEA.ChIP
Commit: 0145cf84ea7b89b0308889003c5a6b1e032784ea
Author: yberda <76262548+yberda@users.noreply.github.com>
Date: 2025-07-01 11:43:58 +0200
Commit message:
Commit: 0145cf84ea7b89b0308889003c5a6b1e032784ea
Author: yberda <76262548+yberda@users.noreply.github.com>
Date: 2025-07-01 11:43:58 +0200
Commit message:
Delete vignettes/.Rhistory
Package: TFEA.ChIP
Commit: 91a3e21774bb0bd6cf6e390fbd74816d0ce5461c
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-07-01 11:32:57 +0200
Commit message:
Commit: 91a3e21774bb0bd6cf6e390fbd74816d0ce5461c
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-07-01 11:32:57 +0200
Commit message:
changed NEWS
Package: TFEA.ChIP
Commit: bfbc4a2799a0d6fbe54cc34a8f6e205bf490d1de
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-07-01 11:20:17 +0200
Commit message:
Commit: bfbc4a2799a0d6fbe54cc34a8f6e205bf490d1de
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-07-01 11:20:17 +0200
Commit message:
changed vignette and fxs
Package: TFEA.ChIP
Commit: 203c1a6f22282a6319e2074cb6619cc8cf21b211
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-04-21 13:56:45 +0200
Commit message:
Commit: 203c1a6f22282a6319e2074cb6619cc8cf21b211
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-04-21 13:56:45 +0200
Commit message:
updated vignette and db
Package: TFEA.ChIP
Commit: cbef8e0e6ba85376fa4d1f8938448512b1abd37e
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-04-21 12:21:27 +0200
Commit message:
Commit: cbef8e0e6ba85376fa4d1f8938448512b1abd37e
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-04-21 12:21:27 +0200
Commit message:
new changes
Package: TFEA.ChIP
Commit: 5eb6c131b7e77ada625cdabbc416decd4640b749
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-04-20 23:22:45 +0200
Commit message:
Commit: 5eb6c131b7e77ada625cdabbc416decd4640b749
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-04-20 23:22:45 +0200
Commit message:
upgraded version
Package: TFEA.ChIP
Commit: b9214a717dc1d72a3874d7b28c8c928a121096a1
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-04-20 23:15:29 +0200
Commit message:
Commit: b9214a717dc1d72a3874d7b28c8c928a121096a1
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-04-20 23:15:29 +0200
Commit message:
updated vignette
Package: TFEA.ChIP
Commit: 01cb1e580973140e0cb7a19c145b46546c8dd98c
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-04-20 23:14:26 +0200
Commit message:
Commit: 01cb1e580973140e0cb7a19c145b46546c8dd98c
Author: yosra <yosraberrouayel@gmail.com>
Date: 2025-04-20 23:14:26 +0200
Commit message:
updated vignette
Package: TFEA.ChIP
Commit: bda01661091ca1d73f420e71674d636ac0dc4b47
Author: yberda <76262548+yberda@users.noreply.github.com>
Date: 2025-04-20 23:11:44 +0200
Commit message:
Commit: bda01661091ca1d73f420e71674d636ac0dc4b47
Author: yberda <76262548+yberda@users.noreply.github.com>
Date: 2025-04-20 23:11:44 +0200
Commit message:
Merge branch 'LauraPS1:master' into master
Package: TFEA.ChIP
Commit: fbbdfb83bee2b7a43206a84d6ec9419b1a00c6fa
Author: LauraPS1 <lpsantamaria@iib.uam.es>
Date: 2023-04-12 08:37:24 +0200
Commit message:
Commit: fbbdfb83bee2b7a43206a84d6ec9419b1a00c6fa
Author: LauraPS1 <lpsantamaria@iib.uam.es>
Date: 2023-04-12 08:37:24 +0200
Commit message:
Version bump
Package: TFEA.ChIP
Commit: fc1641359af5f31e773acb9dfc9cecd99361a584
Author: LauraPS1 <lpsantamaria@iib.uam.es>
Date: 2023-04-12 08:37:24 +0200
Commit message:
Commit: fc1641359af5f31e773acb9dfc9cecd99361a584
Author: LauraPS1 <lpsantamaria@iib.uam.es>
Date: 2023-04-12 08:37:24 +0200
Commit message:
Version bump
Package: TFEA.ChIP
Commit: be9c4c25a57399e8502e21e6cce7c0ea99f00662
Author: LauraPS1 <lpsantamaria@iib.uam.es>
Date: 2023-04-12 08:30:31 +0200
Commit message:
Commit: be9c4c25a57399e8502e21e6cce7c0ea99f00662
Author: LauraPS1 <lpsantamaria@iib.uam.es>
Date: 2023-04-12 08:30:31 +0200
Commit message:
patched error on BioC builder
Package: TFEA.ChIP
Commit: 4027811496070330348666d74f89fe90ac006e3b
Author: LauraPS1 <lpsantamaria@iib.uam.es>
Date: 2023-04-12 08:30:31 +0200
Commit message:
Commit: 4027811496070330348666d74f89fe90ac006e3b
Author: LauraPS1 <lpsantamaria@iib.uam.es>
Date: 2023-04-12 08:30:31 +0200
Commit message:
patched error on BioC builder
Package: TFEA.ChIP
Commit: f633264230229c4d72fe3463f434179aa68c170b
Author: LauraPS1 <lpsantamaria@iib.uam.es>
Date: 2022-02-03 09:13:48 +0100
Commit message:
Commit: f633264230229c4d72fe3463f434179aa68c170b
Author: LauraPS1 <lpsantamaria@iib.uam.es>
Date: 2022-02-03 09:13:48 +0100
Commit message:
Corrected version number
Package: TFEA.ChIP
Commit: 747560ceabbf38d074cf660bd09a0785d392aeb3
Author: LauraPS1 <lpsantamaria@iib.uam.es>
Date: 2022-02-03 09:12:14 +0100
Commit message:
Commit: 747560ceabbf38d074cf660bd09a0785d392aeb3
Author: LauraPS1 <lpsantamaria@iib.uam.es>
Date: 2022-02-03 09:12:14 +0100
Commit message:
Corrected version number
Package: TFEA.ChIP
Commit: d27c11884bdd68c50e1c80f1d3fc12adc1de9f23
Author: LauraPS1 <lpsantamaria@iib.uam.es>
Date: 2022-02-03 09:07:04 +0100
Commit message:
Commit: d27c11884bdd68c50e1c80f1d3fc12adc1de9f23
Author: LauraPS1 <lpsantamaria@iib.uam.es>
Date: 2022-02-03 09:07:04 +0100
Commit message:
Version 2.1.1 upgrade
Package: TFEA.ChIP
Commit: b61e73ae7351f9303d118063aa7384c9594b3cb0
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2021-11-21 01:00:12 -0500
Commit message:
Commit: b61e73ae7351f9303d118063aa7384c9594b3cb0
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2021-11-21 01:00:12 -0500
Commit message:
Pass serialized S4 instances thru updateObject()
Package: TFEA.ChIP
Commit: 9cf79885375cace411f9bcfb26dabc97d359ce0b
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-10-26 16:40:40 +0000
Commit message:
Commit: 9cf79885375cace411f9bcfb26dabc97d359ce0b
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-10-26 16:40:40 +0000
Commit message:
bump x.y.z version to odd y following creation of RELEASE_3_14 branch
Package: TFEA.ChIP
Commit: 0869cececfaac555e03f86dbe3b9aca19b10a3b1
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-10-26 16:40:40 +0000
Commit message:
Commit: 0869cececfaac555e03f86dbe3b9aca19b10a3b1
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-10-26 16:40:40 +0000
Commit message:
bump x.y.z version to even y prior to creation of RELEASE_3_14 branch
Package: TFEA.ChIP
Commit: 5f5558bb8f792e102abb8b1045c75b7073103b0e
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-05-19 16:32:25 +0000
Commit message:
Commit: 5f5558bb8f792e102abb8b1045c75b7073103b0e
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-05-19 16:32:25 +0000
Commit message:
bump x.y.z version to odd y following creation of RELEASE_3_13 branch
Package: TFEA.ChIP
Commit: dfb2c008e5a1c3c145e690203c311f2e440b1bd0
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-05-19 16:32:25 +0000
Commit message:
Commit: dfb2c008e5a1c3c145e690203c311f2e440b1bd0
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-05-19 16:32:25 +0000
Commit message:
bump x.y.z version to even y prior to creation of RELEASE_3_13 branch
Package: TFEA.ChIP
Commit: f6a9d18bb56c5e57b3768c8f7789e216b2524d33
Author: LauraPS1 <lpsantamaria@iib.uam.es>
Date: 2021-02-01 09:28:03 +0100
Commit message:
Commit: f6a9d18bb56c5e57b3768c8f7789e216b2524d33
Author: LauraPS1 <lpsantamaria@iib.uam.es>
Date: 2021-02-01 09:28:03 +0100
Commit message:
Simplified plotting functions and data objects stored
Package: TFEA.ChIP
Commit: 53371664ada1ff5bf9f1ec1da865fc84e6523d33
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2020-10-27 11:30:45 -0400
Commit message:
Commit: 53371664ada1ff5bf9f1ec1da865fc84e6523d33
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2020-10-27 11:30:45 -0400
Commit message:
bump x.y.z version to odd y following creation of RELEASE_3_12 branch
Package: TFEA.ChIP
Commit: 5e74f5bc6e080d9727583c28da461b171e473a75
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2020-10-27 11:30:44 -0400
Commit message:
Commit: 5e74f5bc6e080d9727583c28da461b171e473a75
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2020-10-27 11:30:44 -0400
Commit message:
bump x.y.z version to even y prior to creation of RELEASE_3_12 branch
Package: TFEA.ChIP
Commit: ef667914060ce6e37ee00193c11ea0aa3c447a34
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2020-04-27 19:12:47 +0000
Commit message:
Commit: ef667914060ce6e37ee00193c11ea0aa3c447a34
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2020-04-27 19:12:47 +0000
Commit message:
bump x.y.z version to odd y following creation of RELEASE_3_11 branch
Package: TFEA.ChIP
Commit: 14a4dbfafb4eca6f99c3ab39e7168c029053c7e4
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2020-04-27 19:12:47 +0000
Commit message:
Commit: 14a4dbfafb4eca6f99c3ab39e7168c029053c7e4
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2020-04-27 19:12:47 +0000
Commit message:
bump x.y.z version to even y prior to creation of RELEASE_3_11 branch
Package: TFEA.ChIP
Commit: 63408dbbc5f6ecac0ec984cd86b63885e18dd1c0
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2019-10-29 13:42:37 -0400
Commit message:
Commit: 63408dbbc5f6ecac0ec984cd86b63885e18dd1c0
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2019-10-29 13:42:37 -0400
Commit message:
bump x.y.z version to odd y after creation of RELEASE_3_10 branch
Package: TFEA.ChIP
Commit: dbdf780677bc0c0697c84787ba42b5bd66f35318
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2019-10-29 13:10:56 -0400
Commit message:
Commit: dbdf780677bc0c0697c84787ba42b5bd66f35318
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2019-10-29 13:10:56 -0400
Commit message:
bump x.y.z version to even y prior to creation of RELEASE_3_10 branch
Package: TFEA.ChIP
Commit: c509568e2f72e5759a355ccbb505f346c8dbfe1c
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-10-22 09:19:31 +0200
Commit message:
Commit: c509568e2f72e5759a355ccbb505f346c8dbfe1c
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-10-22 09:19:31 +0200
Commit message:
Citation file added
Package: TFEA.ChIP
Commit: 48918613289cd0d3938917d5fdee95b34d8cceec
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-07-18 08:39:50 +0200
Commit message:
Commit: 48918613289cd0d3938917d5fdee95b34d8cceec
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-07-18 08:39:50 +0200
Commit message:
error in GeneID2entrez solved
Package: TFEA.ChIP
Commit: 5a0af57866b5f0b713a1bdad475bde2e0757a910
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-06-17 15:40:59 +0200
Commit message:
Commit: 5a0af57866b5f0b713a1bdad475bde2e0757a910
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-06-17 15:40:59 +0200
Commit message:
bug fix in preprocessInputData: toupper() call added to h2h section
Package: TFEA.ChIP
Commit: e62d9bd1f69f108dec17650f528b778b47750476
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-06-17 15:09:52 +0200
Commit message:
Commit: e62d9bd1f69f108dec17650f528b778b47750476
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-06-17 15:09:52 +0200
Commit message:
version bump
Package: TFEA.ChIP
Commit: c25a6c8b8496f390ce262b9d3cd23c869a28e5c7
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-06-17 15:09:04 +0200
Commit message:
Commit: c25a6c8b8496f390ce262b9d3cd23c869a28e5c7
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-06-17 15:09:04 +0200
Commit message:
bug fix in GeneID2entrez: toupper() call moved to h2h section
Package: TFEA.ChIP
Commit: efb22a68edd5e9666c4f5517454f1698430687f7
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-06-17 12:21:28 +0200
Commit message:
Commit: efb22a68edd5e9666c4f5517454f1698430687f7
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-06-17 12:21:28 +0200
Commit message:
trimming whitespaces in gene IDs in preprocessInputData()
Package: TFEA.ChIP
Commit: a856369f1f0269ecf3ffba8059a64e9a5a1423a6
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-06-17 12:19:38 +0200
Commit message:
Commit: a856369f1f0269ecf3ffba8059a64e9a5a1423a6
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-06-17 12:19:38 +0200
Commit message:
Merge branch 'master' of git.bioconductor.org:packages/TFEA.ChIP
Package: TFEA.ChIP
Commit: 16f1599f66f97901be7fe4f4527189654d5a9d37
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-06-17 12:17:50 +0200
Commit message:
Commit: 16f1599f66f97901be7fe4f4527189654d5a9d37
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-06-17 12:17:50 +0200
Commit message:
trimming whitespaces in gene IDs in preprocessInputData()
Package: TFEA.ChIP
Commit: efa86e2f751868a52b26ef7b30377bc5016e55da
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2019-05-02 12:15:32 -0400
Commit message:
Commit: efa86e2f751868a52b26ef7b30377bc5016e55da
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2019-05-02 12:15:32 -0400
Commit message:
bump x.y.z versions to odd y after creation of RELEASE_3_9 branch
Package: TFEA.ChIP
Commit: 830fe8eaac5c316bb9233e0f19ecfdf762dc6264
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2019-05-02 11:54:10 -0400
Commit message:
Commit: 830fe8eaac5c316bb9233e0f19ecfdf762dc6264
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2019-05-02 11:54:10 -0400
Commit message:
bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch
Package: TFEA.ChIP
Commit: 2a3e0449abb4201fd91cc9f3a9994f14aa7ce7f1
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-04-10 08:36:25 +0200
Commit message:
Commit: 2a3e0449abb4201fd91cc9f3a9994f14aa7ce7f1
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-04-10 08:36:25 +0200
Commit message:
testing issue in test_contingency_matrix solved
Package: TFEA.ChIP
Commit: bae50f79eda373f0a95c046e03b77b2345bcae3f
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-04-10 08:27:27 +0200
Commit message:
Commit: bae50f79eda373f0a95c046e03b77b2345bcae3f
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-04-10 08:27:27 +0200
Commit message:
bug in GeneID2entrez examples solved
Package: TFEA.ChIP
Commit: b578556de614894621844b15d34d7d8422eead26
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-04-05 15:10:31 +0200
Commit message:
Commit: b578556de614894621844b15d34d7d8422eead26
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-04-05 15:10:31 +0200
Commit message:
tests updated
Package: TFEA.ChIP
Commit: 3d76fee2703f6783962075db5f9144acb40cbe4f
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-03-15 11:52:24 +0100
Commit message:
Commit: 3d76fee2703f6783962075db5f9144acb40cbe4f
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-03-15 11:52:24 +0100
Commit message:
New gene-TR database. See NEWS file
Package: TFEA.ChIP
Commit: 2eab12dcbdb96f92b85d15e373a7e946ed9ba30f
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-03-14 16:16:11 +0100
Commit message:
Commit: 2eab12dcbdb96f92b85d15e373a7e946ed9ba30f
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-03-14 16:16:11 +0100
Commit message:
New gene-TR database. See NEWS file
Package: TFEA.ChIP
Commit: 0717bb88e6ca0c5f02fdf97c6d97d11ee69a6e34
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-02-11 12:25:25 +0100
Commit message:
Commit: 0717bb88e6ca0c5f02fdf97c6d97d11ee69a6e34
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-02-11 12:25:25 +0100
Commit message:
Bug in preproccessInputData solved (DESeqResults to data.frame)
Package: TFEA.ChIP
Commit: 7b065c2da03be298e0d3f1f0921157fe323d5baa
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-01-22 15:55:38 +0100
Commit message:
Commit: 7b065c2da03be298e0d3f1f0921157fe323d5baa
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-01-22 15:55:38 +0100
Commit message:
multiple boolean variable error solved
Package: TFEA.ChIP
Commit: db34ac31751e011bd18f5411f6eb21ebf31dc5df
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-01-22 15:55:07 +0100
Commit message:
Commit: db34ac31751e011bd18f5411f6eb21ebf31dc5df
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-01-22 15:55:07 +0100
Commit message:
multiple boolean variable error solved
Package: TFEA.ChIP
Commit: 858ddc436b0c97e4543e19477b4156f5ab7003ba
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-01-22 15:49:22 +0100
Commit message:
Commit: 858ddc436b0c97e4543e19477b4156f5ab7003ba
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2019-01-22 15:49:22 +0100
Commit message:
multiple boolean variable error solved
Package: TFEA.ChIP
Commit: af4cc5a68174047894fbd36501459b29ba9bedec
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-12-11 10:25:56 +0100
Commit message:
Commit: af4cc5a68174047894fbd36501459b29ba9bedec
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-12-11 10:25:56 +0100
Commit message:
bug solved in get_chip_index (encode ChIP selection)
Package: TFEA.ChIP
Commit: ff7479c0d4a10df2e846c10b569e0ebe066f0bc5
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-12-05 15:26:58 +0100
Commit message:
Commit: ff7479c0d4a10df2e846c10b569e0ebe066f0bc5
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-12-05 15:26:58 +0100
Commit message:
Warning solving: extra man page removed
Package: TFEA.ChIP
Commit: 447a3386951570fe350b2d4c71b2928d44409ef5
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-12-03 09:16:10 +0100
Commit message:
Commit: 447a3386951570fe350b2d4c71b2928d44409ef5
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-12-03 09:16:10 +0100
Commit message:
Fixed conflicts in version change
Package: TFEA.ChIP
Commit: 9be3149112070bf1c55a6e9009652c447f002338
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-12-03 09:10:50 +0100
Commit message:
Commit: 9be3149112070bf1c55a6e9009652c447f002338
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-12-03 09:10:50 +0100
Commit message:
update: TF ranking & faster GSEA_run
Package: TFEA.ChIP
Commit: 91b2e97e989ae55e48890c6a24b2d9ddabffc9a3
Author: vobencha <vobencha@gmail.com>
Date: 2018-10-30 11:54:38 -0400
Commit message:
Commit: 91b2e97e989ae55e48890c6a24b2d9ddabffc9a3
Author: vobencha <vobencha@gmail.com>
Date: 2018-10-30 11:54:38 -0400
Commit message:
bump x.y.z versions to odd y after creation of RELEASE_3_8 branch
Package: TFEA.ChIP
Commit: 28b08db43aad9682024589b92ea21a915fdccf2c
Author: vobencha <vobencha@gmail.com>
Date: 2018-10-30 11:42:07 -0400
Commit message:
Commit: 28b08db43aad9682024589b92ea21a915fdccf2c
Author: vobencha <vobencha@gmail.com>
Date: 2018-10-30 11:42:07 -0400
Commit message:
bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch
Package: TFEA.ChIP
Commit: 1d316b4a50a3f5abe921d871e494518f91c2b4c0
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-08-22 11:52:04 +0200
Commit message:
Commit: 1d316b4a50a3f5abe921d871e494518f91c2b4c0
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-08-22 11:52:04 +0200
Commit message:
Added mouse to mouse ID translation and updated database
Package: TFEA.ChIP
Commit: 33855f5331aef32d1c4751f607f24896258df9da
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-06-18 09:27:48 +0200
Commit message:
Commit: 33855f5331aef32d1c4751f607f24896258df9da
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-06-18 09:27:48 +0200
Commit message:
Merge branch 'master' of git.bioconductor.org:packages/TFEA.ChIP
Package: TFEA.ChIP
Commit: 24181cac166872eefb3c312049d22d6c64c736f9
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-06-18 09:26:06 +0200
Commit message:
Commit: 24181cac166872eefb3c312049d22d6c64c736f9
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-06-18 09:26:06 +0200
Commit message:
bug in GR2tfbs solved (extracting ChIP-seq IDs)
Package: TFEA.ChIP
Commit: cead330611320c8d713b30eb717b38f36153f5da
Author: vobencha <valerie.obenchain@roswellpark.org>
Date: 2018-04-30 10:41:43 -0400
Commit message:
Commit: cead330611320c8d713b30eb717b38f36153f5da
Author: vobencha <valerie.obenchain@roswellpark.org>
Date: 2018-04-30 10:41:43 -0400
Commit message:
bump x.y.z versions to odd y after creation of RELEASE_3_7 branch
Package: TFEA.ChIP
Commit: 47e4e6ea0e4c4afaba3be5332554adcc3d600d30
Author: vobencha <valerie.obenchain@roswellpark.org>
Date: 2018-04-30 10:35:49 -0400
Commit message:
Commit: 47e4e6ea0e4c4afaba3be5332554adcc3d600d30
Author: vobencha <valerie.obenchain@roswellpark.org>
Date: 2018-04-30 10:35:49 -0400
Commit message:
bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch
Package: TFEA.ChIP
Commit: 5b3a53b10235cc805f152eee66f37ee9a851e938
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-04-20 10:37:54 +0200
Commit message:
Commit: 5b3a53b10235cc805f152eee66f37ee9a851e938
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-04-20 10:37:54 +0200
Commit message:
Unit test error solved. Checking if biomaRt host is available before translating mouse IDs
Package: TFEA.ChIP
Commit: 7f71fbdcb098365e150ec8fd569159dae8e3287c
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-04-04 14:06:48 +0200
Commit message:
Commit: 7f71fbdcb098365e150ec8fd569159dae8e3287c
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-04-04 14:06:48 +0200
Commit message:
version bump
Package: TFEA.ChIP
Commit: e204fc44ce3d478996ed174ee50cd86dac3f8407
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-04-04 14:05:52 +0200
Commit message:
Commit: e204fc44ce3d478996ed174ee50cd86dac3f8407
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-04-04 14:05:52 +0200
Commit message:
man pages updated
Package: TFEA.ChIP
Commit: 9b92751f90108a6ce6ac4331747d493b40a60c11
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-04-02 08:23:10 +0200
Commit message:
Commit: 9b92751f90108a6ce6ac4331747d493b40a60c11
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-04-02 08:23:10 +0200
Commit message:
correction in dataset documentation
Package: TFEA.ChIP
Commit: 874e3ef61c4640344ec63ca18ed1f95140bb6145
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-04-02 08:17:17 +0200
Commit message:
Commit: 874e3ef61c4640344ec63ca18ed1f95140bb6145
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-04-02 08:17:17 +0200
Commit message:
example data updated
Package: TFEA.ChIP
Commit: bb69819d07ddf026c7d27aabebce51d0ff3c58e1
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-03-22 12:48:19 +0100
Commit message:
Commit: bb69819d07ddf026c7d27aabebce51d0ff3c58e1
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-03-22 12:48:19 +0100
Commit message:
update example datasets and its documentation
Package: TFEA.ChIP
Commit: 0232a8ade441ff65eec0a1ed0928e533f12b428b
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-03-21 14:40:23 +0100
Commit message:
Commit: 0232a8ade441ff65eec0a1ed0928e533f12b428b
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-03-21 14:40:23 +0100
Commit message:
database updated, includes distant TFBS, all documentation and test units updated
Package: TFEA.ChIP
Commit: d6e0e0b8cf8ffe838085b5ee17ed5836542c5078
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-03-21 08:20:16 +0100
Commit message:
Commit: d6e0e0b8cf8ffe838085b5ee17ed5836542c5078
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-03-21 08:20:16 +0100
Commit message:
Bug in GSEA_run fixed
Package: TFEA.ChIP
Commit: d86d030dc46a17e446f68de607e34a74c5fc174c
Author: Luis del Peso <lpeso@iib.uam.es>
Date: 2018-03-20 21:14:54 +0100
Commit message:
Commit: d86d030dc46a17e446f68de607e34a74c5fc174c
Author: Luis del Peso <lpeso@iib.uam.es>
Date: 2018-03-20 21:14:54 +0100
Commit message:
plot_CM function modified to accept new table containing log2OR and log10.adj.pval columns
Package: TFEA.ChIP
Commit: eced9a462010708dc50494a82738f0054a9610f8
Author: Laura Puente-Santamaria <lpsantamaria@iib.uam.es>
Date: 2018-03-20 13:34:09 +0100
Commit message:
Commit: eced9a462010708dc50494a82738f0054a9610f8
Author: Laura Puente-Santamaria <lpsantamaria@iib.uam.es>
Date: 2018-03-20 13:34:09 +0100
Commit message:
Update All-functions.R
Package: TFEA.ChIP
Commit: ffc0c4e7178938d49ae0a46b0eed67d9f0fa5b47
Author: Laura Puente-Santamaria <lpsantamaria@iib.uam.es>
Date: 2018-03-20 12:08:22 +0100
Commit message:
Commit: ffc0c4e7178938d49ae0a46b0eed67d9f0fa5b47
Author: Laura Puente-Santamaria <lpsantamaria@iib.uam.es>
Date: 2018-03-20 12:08:22 +0100
Commit message:
Solved bug in GR2tfbs_db Now ChIP-Seqs that don't have any peaks assigned to genes are eliminated from the output list.
Package: TFEA.ChIP
Commit: 43ae5d237387adba8b71bb6c4356a28f715d7a95
Author: luis <lpeso@iib.uam.es>
Date: 2018-03-20 11:31:40 +0100
Commit message:
Commit: 43ae5d237387adba8b71bb6c4356a28f715d7a95
Author: luis <lpeso@iib.uam.es>
Date: 2018-03-20 11:31:40 +0100
Commit message:
getCMstats modified to include distances
Package: TFEA.ChIP
Commit: e8f294ce20bd7d3a9ac3081b59fb1a0abe73055d
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-03-16 14:09:16 +0100
Commit message:
Commit: e8f294ce20bd7d3a9ac3081b59fb1a0abe73055d
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-03-16 14:09:16 +0100
Commit message:
bug in GSEA_EnrichmentScore solved
Package: TFEA.ChIP
Commit: 2072af047a5fe6b9726d136a7f555e706d57173e
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-03-16 13:56:17 +0100
Commit message:
Commit: 2072af047a5fe6b9726d136a7f555e706d57173e
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-03-16 13:56:17 +0100
Commit message:
bug at plotting log(OR) solved
Package: TFEA.ChIP
Commit: c39a5a9c6d8852cf8ebe41337c9f6fd11188d436
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-03-16 13:21:18 +0100
Commit message:
Commit: c39a5a9c6d8852cf8ebe41337c9f6fd11188d436
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-03-16 13:21:18 +0100
Commit message:
GSEA_run compures weighted score, output tables include metadata, plot_CM plots log(OR)
Package: TFEA.ChIP
Commit: 9317c78751841198d3f04c122d581c5acb9ef51b
Author: Luis del Peso <lpeso@iib.uam.es>
Date: 2018-03-15 17:33:48 +0100
Commit message:
Commit: 9317c78751841198d3f04c122d581c5acb9ef51b
Author: Luis del Peso <lpeso@iib.uam.es>
Date: 2018-03-15 17:33:48 +0100
Commit message:
adds metadata to getCMstats function
Package: TFEA.ChIP
Commit: 03f8fcdfe4b3da72f05ea29dad0492989e828443
Author: luis <lpeso@iib.uam.es>
Date: 2018-03-09 10:40:57 +0100
Commit message:
Commit: 03f8fcdfe4b3da72f05ea29dad0492989e828443
Author: luis <lpeso@iib.uam.es>
Date: 2018-03-09 10:40:57 +0100
Commit message:
plot LOR instead of OR
Package: TFEA.ChIP
Commit: 88c0c33771d488d6a85287f75dcc1dcfcfcf8bd4
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-02-21 09:06:16 +0100
Commit message:
Commit: 88c0c33771d488d6a85287f75dcc1dcfcfcf8bd4
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-02-21 09:06:16 +0100
Commit message:
version
Package: TFEA.ChIP
Commit: 1646dc049bb88f35d1fa3a7af3edcc7b8e05ca39
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-02-19 13:30:15 +0100
Commit message:
Commit: 1646dc049bb88f35d1fa3a7af3edcc7b8e05ca39
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-02-19 13:30:15 +0100
Commit message:
plot_ES bug fixed
Package: TFEA.ChIP
Commit: a1ec9a784e56309b7c409bd9a83455b93431e4d0
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-02-16 12:02:15 +0100
Commit message:
Commit: a1ec9a784e56309b7c409bd9a83455b93431e4d0
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-02-16 12:02:15 +0100
Commit message:
TF gene symbols updated
Package: TFEA.ChIP
Commit: e5b21a4498c12b90c3353901808283f845523cd6
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-01-15 11:26:05 +0100
Commit message:
Commit: e5b21a4498c12b90c3353901808283f845523cd6
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-01-15 11:26:05 +0100
Commit message:
minor bug in plot_RES
Package: TFEA.ChIP
Commit: 76ed94bab90ea065c23b483387f7a4cef8497c41
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-01-15 09:49:47 +0100
Commit message:
Commit: 76ed94bab90ea065c23b483387f7a4cef8497c41
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-01-15 09:49:47 +0100
Commit message:
R version dependency
Package: TFEA.ChIP
Commit: 9d598cf4fb991d8cc1b3993b771f76e84c31e797
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-01-15 09:43:40 +0100
Commit message:
Commit: 9d598cf4fb991d8cc1b3993b771f76e84c31e797
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2018-01-15 09:43:40 +0100
Commit message:
minor bug in plot_RES solved
Package: TFEA.ChIP
Commit: 6253df59a741565d9263570ae9c0f4c79197e674
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2017-12-15 14:02:07 +0100
Commit message:
Commit: 6253df59a741565d9263570ae9c0f4c79197e674
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2017-12-15 14:02:07 +0100
Commit message:
substitute for loops with applys, expand documentation, and other corrections
Package: TFEA.ChIP
Commit: a5ecba878d05e5bf56d4fd91257b36d0684a8205
Author: Laura Puente-Santamaria <lpsantamaria@iib.uam.es>
Date: 2017-12-11 08:24:14 +0100
Commit message:
Commit: a5ecba878d05e5bf56d4fd91257b36d0684a8205
Author: Laura Puente-Santamaria <lpsantamaria@iib.uam.es>
Date: 2017-12-11 08:24:14 +0100
Commit message:
version bump
Package: TFEA.ChIP
Commit: 8d4d877e1f844c205eff754ad1ad19f77d54d991
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2017-12-05 10:30:23 +0100
Commit message:
Commit: 8d4d877e1f844c205eff754ad1ad19f77d54d991
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2017-12-05 10:30:23 +0100
Commit message:
Merge branch 'master' of https://github.com/LauraPS1/TFEA.ChIP
Package: TFEA.ChIP
Commit: 1ff830b724963969ad899e49c5a82c1731f4c1a3
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2017-12-05 10:29:20 +0100
Commit message:
Commit: 1ff830b724963969ad899e49c5a82c1731f4c1a3
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2017-12-05 10:29:20 +0100
Commit message:
namespace update
Package: TFEA.ChIP
Commit: 04a960c5fd22d015952e2aafc148c50b7c1e1c7f
Author: Laura Puente-Santamaria <lpsantamaria@iib.uam.es>
Date: 2017-12-05 09:43:41 +0100
Commit message:
Commit: 04a960c5fd22d015952e2aafc148c50b7c1e1c7f
Author: Laura Puente-Santamaria <lpsantamaria@iib.uam.es>
Date: 2017-12-05 09:43:41 +0100
Commit message:
Update DESCRIPTION version bump
Package: TFEA.ChIP
Commit: 61c1e2c5f1733eadc6f1fe032eb4f3d1fbebde33
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2017-12-05 09:36:42 +0100
Commit message:
Commit: 61c1e2c5f1733eadc6f1fe032eb4f3d1fbebde33
Author: LauraPS1 <lpsantamaria@iib.upm.es>
Date: 2017-12-05 09:36:42 +0100
Commit message:
Extended TFBS, missing else & mouse translation - Extended TFBS database with 63 new ChIP-Seq experiment added. - Missing else condition in txt2GR corrected. - mouse (mus musculus) gene ID translation to human Entrez Gene IDs implemented.
Package: TFEA.ChIP
Commit: 21d7297d8e83f5f0d1b66234aecf18a08cd5c7bc
Author: Laura Puente-Santamaria <lpsantamaria@iib.uam.es>
Date: 2017-11-22 13:43:06 +0100
Commit message:
Commit: 21d7297d8e83f5f0d1b66234aecf18a08cd5c7bc
Author: Laura Puente-Santamaria <lpsantamaria@iib.uam.es>
Date: 2017-11-22 13:43:06 +0100
Commit message:
version bump
Package: tximportData
Commit: dba19b905fc270fef7cd8a9c384b259b953a3fb9
Author: Mike Love <mikelove@users.noreply.github.com>
Date: 2025-07-01 10:55:27 -0400
Commit message:
Commit: dba19b905fc270fef7cd8a9c384b259b953a3fb9
Author: Mike Love <mikelove@users.noreply.github.com>
Date: 2025-07-01 10:55:27 -0400
Commit message:
adding oarfish quants
Package: tximport
Commit: 65324314862afb8fa40f3ed9d7e3b6fc620b1394
Author: Mike Love <mikelove@users.noreply.github.com>
Date: 2025-07-01 10:46:29 -0400
Commit message:
Commit: 65324314862afb8fa40f3ed9d7e3b6fc620b1394
Author: Mike Love <mikelove@users.noreply.github.com>
Date: 2025-07-01 10:46:29 -0400
Commit message:
resolve
Package: tximport
Commit: bd5c42a8a1647648263bc5cfafd4754632ea1d12
Author: Mike Love <mikelove@users.noreply.github.com>
Date: 2025-07-01 10:45:33 -0400
Commit message:
Commit: bd5c42a8a1647648263bc5cfafd4754632ea1d12
Author: Mike Love <mikelove@users.noreply.github.com>
Date: 2025-07-01 10:45:33 -0400
Commit message:
bump
Package: tximport
Commit: d3e3fb3e6f9027840e6379cc8dd497fdb82a200d
Author: Mike Love <mikelove@users.noreply.github.com>
Date: 2025-07-01 10:45:20 -0400
Commit message:
Commit: d3e3fb3e6f9027840e6379cc8dd497fdb82a200d
Author: Mike Love <mikelove@users.noreply.github.com>
Date: 2025-07-01 10:45:20 -0400
Commit message:
fixing infRepsImporter for oarfish & piscem
Package: BiocHail
Commit: 89db83f52dd6eb2ac853157b5f566b5e40d83cc2
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-07-01 08:20:55 -0400
Commit message:
Commit: 89db83f52dd6eb2ac853157b5f566b5e40d83cc2
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-07-01 08:20:55 -0400
Commit message:
add check on UKBB PATH variable for matrixtable
Package: tanggle
Commit: 6637b6d1d105ac7d43644d75dd5bdfdce7a79ffc
Author: Klaus Schliep <klaus.schliep@gmail.com>
Date: 2025-07-01 13:56:07 +0200
Commit message:
Commit: 6637b6d1d105ac7d43644d75dd5bdfdce7a79ffc
Author: Klaus Schliep <klaus.schliep@gmail.com>
Date: 2025-07-01 13:56:07 +0200
Commit message:
improvements to allow outline plots
Package: Chicago
Commit: 75f4a3b333d373220b9b5c6544aa7216fb4dcf8e
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-07-01 03:10:32 -0700
Commit message:
Commit: 75f4a3b333d373220b9b5c6544aa7216fb4dcf8e
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-07-01 03:10:32 -0700
Commit message:
Chicago 1.37.1: Add GenomeInfoDb to Suggests
Package: BgeeCall
Commit: f541264f21339cc754ffd746c4d48f4964685cb1
Author: Julien Wollbrett <julien.wollbrett@unil.ch>
Date: 2025-07-01 10:53:27 +0200
Commit message:
Commit: f541264f21339cc754ffd746c4d48f4964685cb1
Author: Julien Wollbrett <julien.wollbrett@unil.ch>
Date: 2025-07-01 10:53:27 +0200
Commit message:
update import used to run the function create_TxDb
Package: tanggle
Commit: 93cedb1a8ec630aae5d3bcc1af8cbb56ab8ca47d
Author: Klaus Schliep <klaus.schliep@gmail.com>
Date: 2025-06-25 17:15:57 +0200
Commit message:
Commit: 93cedb1a8ec630aae5d3bcc1af8cbb56ab8ca47d
Author: Klaus Schliep <klaus.schliep@gmail.com>
Date: 2025-06-25 17:15:57 +0200
Commit message:
update
Package: tanggle
Commit: ac97fd2aff52566546b48487305dbc1dbb3ce37c
Author: Klaus Schliep <klaus.schliep@gmail.com>
Date: 2025-06-24 16:58:23 +0200
Commit message:
Commit: ac97fd2aff52566546b48487305dbc1dbb3ce37c
Author: Klaus Schliep <klaus.schliep@gmail.com>
Date: 2025-06-24 16:58:23 +0200
Commit message:
increase version number
Package: tanggle
Commit: 6a49f7b9f8df55d9821c485d4530da5bbdb0137f
Author: Klaus Schliep <klaus.schliep@gmail.com>
Date: 2025-06-24 16:36:54 +0200
Commit message:
Commit: 6a49f7b9f8df55d9821c485d4530da5bbdb0137f
Author: Klaus Schliep <klaus.schliep@gmail.com>
Date: 2025-06-24 16:36:54 +0200
Commit message:
fix bugs
Package: tanggle
Commit: 5439ee3a92c1d8614c4b22909b2a86b75a74cd78
Author: Klaus Schliep <klaus.schliep@gmail.com>
Date: 2025-06-23 17:37:01 +0200
Commit message:
Commit: 5439ee3a92c1d8614c4b22909b2a86b75a74cd78
Author: Klaus Schliep <klaus.schliep@gmail.com>
Date: 2025-06-23 17:37:01 +0200
Commit message:
Merge remote-tracking branch 'upstream/devel'
Package: tanggle
Commit: a493874a5003211f8909d828faba214bd7806723
Author: Klaus Schliep <klaus.schliep@gmail.com>
Date: 2025-06-23 16:52:28 +0200
Commit message:
Commit: a493874a5003211f8909d828faba214bd7806723
Author: Klaus Schliep <klaus.schliep@gmail.com>
Date: 2025-06-23 16:52:28 +0200
Commit message:
small improvements
Package: tanggle
Commit: 236bb21b0170bbf4d743994142362d8420f1b87e
Author: Klaus Schliep <klaus.schliep@gmail.com>
Date: 2025-06-23 16:50:34 +0200
Commit message:
Commit: 236bb21b0170bbf4d743994142362d8420f1b87e
Author: Klaus Schliep <klaus.schliep@gmail.com>
Date: 2025-06-23 16:50:34 +0200
Commit message:
Merge pull request #12 from KlausVigo/devel Devel
Package: tanggle
Commit: b9e3667879f7bafc5022a071e8fac1c59119dd52
Author: Klaus Schliep <klaus.schliep@gmail.com>
Date: 2025-06-23 12:21:40 +0200
Commit message:
Commit: b9e3667879f7bafc5022a071e8fac1c59119dd52
Author: Klaus Schliep <klaus.schliep@gmail.com>
Date: 2025-06-23 12:21:40 +0200
Commit message:
Merge pull request #8 from jjustison/swap_minor_edges added a function to swap the minor edges of an evonet object
Package: tanggle
Commit: 8f615a630d1f5dbd03a12528a2a78e891934b861
Author: jjustison <justison@iastate.edu>
Date: 2021-10-25 22:10:02 -0500
Commit message:
Commit: 8f615a630d1f5dbd03a12528a2a78e891934b861
Author: jjustison <justison@iastate.edu>
Date: 2021-10-25 22:10:02 -0500
Commit message:
Update DESCRIPTION
Package: tanggle
Commit: e003e2d44a7485f7cd1c2200ed622cc8cf4d9706
Author: jjustison <justison@iastate.edu>
Date: 2021-10-25 21:57:44 -0500
Commit message:
Commit: e003e2d44a7485f7cd1c2200ed622cc8cf4d9706
Author: jjustison <justison@iastate.edu>
Date: 2021-10-25 21:57:44 -0500
Commit message:
Update swap_hybrid_minor.R
Package: tanggle
Commit: 12e21335955fcacdbd9f8d162efffee143cf9542
Author: Justison <justison@iastate.edu>
Date: 2021-10-13 11:34:11 -0500
Commit message:
Commit: 12e21335955fcacdbd9f8d162efffee143cf9542
Author: Justison <justison@iastate.edu>
Date: 2021-10-13 11:34:11 -0500
Commit message:
added a function to swap the minor edges of an evonet object
Package: orthos
Commit: 758bf08a4e6bdb62ec4bad817f9d709901de3253
Author: ppapasaikas <panp80@gmail.com>
Date: 2025-07-01 09:49:05 +0200
Commit message:
Commit: 758bf08a4e6bdb62ec4bad817f9d709901de3253
Author: ppapasaikas <panp80@gmail.com>
Date: 2025-07-01 09:49:05 +0200
Commit message:
Revert cuda/cudnn installation through basilisk env.
Package: mastR
Commit: 50e1100a81cfb127bd2a98d9668db18579f90b6f
Author: Gene233 <chen_jj97@163.com>
Date: 2025-07-01 13:19:16 +1000
Commit message:
Commit: 50e1100a81cfb127bd2a98d9668db18579f90b6f
Author: Gene233 <chen_jj97@163.com>
Date: 2025-07-01 13:19:16 +1000
Commit message:
merge
Package: mastR
Commit: 5b4df153f786d1dca79ac1e17228bc997a17e3a6
Author: Gene233 <chen_jj97@163.com>
Date: 2025-07-01 13:12:11 +1000
Commit message:
Commit: 5b4df153f786d1dca79ac1e17228bc997a17e3a6
Author: Gene233 <chen_jj97@163.com>
Date: 2025-07-01 13:12:11 +1000
Commit message:
Version bump.
Package: mastR
Commit: b3fd18f8d5215447cebc5962a61bf3a36da4c5ad
Author: Gene233 <chen_jj97@163.com>
Date: 2025-07-01 12:48:34 +1000
Commit message:
Commit: b3fd18f8d5215447cebc5962a61bf3a36da4c5ad
Author: Gene233 <chen_jj97@163.com>
Date: 2025-07-01 12:48:34 +1000
Commit message:
Remove BisqueRNA.
Package: mastR
Commit: 39418ac9b1b23a08165335015fe1ae45085071f6
Author: Gene233 <chen_jj97@163.com>
Date: 2025-03-23 21:46:20 +1100
Commit message:
Commit: 39418ac9b1b23a08165335015fe1ae45085071f6
Author: Gene233 <chen_jj97@163.com>
Date: 2025-03-23 21:46:20 +1100
Commit message:
update mastR sticker
Package: mastR
Commit: 13e1ade594eeb430237908293129d0240b8cc3ec
Author: Gene233 <chen_jj97@163.com>
Date: 2025-03-23 13:36:00 +1100
Commit message:
Commit: 13e1ade594eeb430237908293129d0240b8cc3ec
Author: Gene233 <chen_jj97@163.com>
Date: 2025-03-23 13:36:00 +1100
Commit message:
add sticker for mastR
Package: mastR
Commit: 5696c416c92e3a3ff67a0883e946b23a4f4ec2b0
Author: Gene233 <chen_jj97@163.com>
Date: 2025-03-20 11:43:11 +1100
Commit message:
Commit: 5696c416c92e3a3ff67a0883e946b23a4f4ec2b0
Author: Gene233 <chen_jj97@163.com>
Date: 2025-03-20 11:43:11 +1100
Commit message:
Update citation and add online publication.
Package: mastR
Commit: 3a14bb80a810f5b6bac84196dfa26fdf6218ce56
Author: Gene233 <chen_jj97@163.com>
Date: 2025-03-11 17:43:25 +1100
Commit message:
Commit: 3a14bb80a810f5b6bac84196dfa26fdf6218ce56
Author: Gene233 <chen_jj97@163.com>
Date: 2025-03-11 17:43:25 +1100
Commit message:
Added workflow image into README.
Package: VennDetail
Commit: 550803a64d199c15c2f0586ad04b46601ab263b1
Author: bioguo <bioguo@0587670008.vpn.umich.net>
Date: 2025-07-01 09:52:59 +0800
Commit message:
Commit: 550803a64d199c15c2f0586ad04b46601ab263b1
Author: bioguo <bioguo@0587670008.vpn.umich.net>
Date: 2025-07-01 09:52:59 +0800
Commit message:
Version bump to 1.25.1
Package: VennDetail
Commit: 207260bd55d9a8726bb6cd434fc9556ade237172
Author: bioguo <bioguo@0587670008.vpn.umich.net>
Date: 2025-07-01 09:42:24 +0800
Commit message:
Commit: 207260bd55d9a8726bb6cd434fc9556ade237172
Author: bioguo <bioguo@0587670008.vpn.umich.net>
Date: 2025-07-01 09:42:24 +0800
Commit message:
Update package: with mutiple code re-written
Package: ComBatMet
Commit: 8670c946dbcfc90ccb6b88d8542e8bd7a36605a4
Author: JmWangBio <jmwang.bio@gmail.com>
Date: 2025-06-30 20:42:20 -0400
Commit message:
Commit: 8670c946dbcfc90ccb6b88d8542e8bd7a36605a4
Author: JmWangBio <jmwang.bio@gmail.com>
Date: 2025-06-30 20:42:20 -0400
Commit message:
added R dependency
Package: ComBatMet
Commit: 524cbe415af3a55d04dad45b809eca1cb13e01f8
Author: JmWangBio <jmwang.bio@gmail.com>
Date: 2025-06-30 19:53:02 -0400
Commit message:
Commit: 524cbe415af3a55d04dad45b809eca1cb13e01f8
Author: JmWangBio <jmwang.bio@gmail.com>
Date: 2025-06-30 19:53:02 -0400
Commit message:
version bump 063025
Package: GenomeInfoDb
Commit: 5d6ac7fd47d443e210a68985f4f03baaa6f95e56
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-06-30 14:30:51 -0700
Commit message:
Commit: 5d6ac7fd47d443e210a68985f4f03baaa6f95e56
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-06-30 14:30:51 -0700
Commit message:
GenomeInfoDb 1.45.7 Re-export more of the things that are now defined in Seqinfo. This is a temporary hack to avoid breaking packages that still **explicitly** import these things from GenomeInfoDb.
Package: alabaster.base
Commit: 4a9a667af88e7b9f264bcbfac073b3396dccfc22
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2025-06-30 13:51:05 -0700
Commit message:
Commit: 4a9a667af88e7b9f264bcbfac073b3396dccfc22
Author: LTLA <infinite.monkeys.with.keyboards@gmail.com>
Date: 2025-06-30 13:51:05 -0700
Commit message:
Bumped version to trigger rebuild.
Package: netZooR
Commit: 92c1f69111b5a1c2eb49e7fe73ff41f591719448
Author: Tara Eicher <taraeicher@yahoo.com>
Date: 2025-06-30 16:04:43 -0400
Commit message:
Commit: 92c1f69111b5a1c2eb49e7fe73ff41f591719448
Author: Tara Eicher <taraeicher@yahoo.com>
Date: 2025-06-30 16:04:43 -0400
Commit message:
Modified original path
Package: BiocHail
Commit: 7bf42031f97a5b68e36c2b34fa38907a7406f81d
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-06-30 18:54:00 +0000
Commit message:
Commit: 7bf42031f97a5b68e36c2b34fa38907a7406f81d
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-06-30 18:54:00 +0000
Commit message:
pinned versions done
Package: BiocHail
Commit: 43ad508b2c821d3c4d4e71ed65d6a1c680f4d87a
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-06-30 14:02:11 -0400
Commit message:
Commit: 43ad508b2c821d3c4d4e71ed65d6a1c680f4d87a
Author: vjcitn <stvjc@channing.harvard.edu>
Date: 2025-06-30 14:02:11 -0400
Commit message:
starting off with reqs for 0.2.135
Package: ELViS
Commit: f966da3295bd60f61e208bb9e5c045dc1e86dd2d
Author: jlee307@uthsc.edu <jlee307@ber1413.cn.isaac.utk.edu>
Date: 2025-06-30 14:09:36 -0400
Commit message:
Commit: f966da3295bd60f61e208bb9e5c045dc1e86dd2d
Author: jlee307@uthsc.edu <jlee307@ber1413.cn.isaac.utk.edu>
Date: 2025-06-30 14:09:36 -0400
Commit message:
bug fix
Package: GenomicScores
Commit: 603d5ed13db378c89401d4e1203de846f2fc8632
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-06-30 18:00:29 +0200
Commit message:
Commit: 603d5ed13db378c89401d4e1203de846f2fc8632
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-06-30 18:00:29 +0200
Commit message:
Bump version
Package: GenomicScores
Commit: 1648a120f662d46f4e7785c86b52a407ba213cb7
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-06-30 18:00:09 +0200
Commit message:
Commit: 1648a120f662d46f4e7785c86b52a407ba213cb7
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-06-30 18:00:09 +0200
Commit message:
Updated script that processes gnomAD data
Package: ENmix
Commit: 71bc47545064d2ee3ddedfba87f0f71eff2ccafa
Author: xuz1 <xuz@niehs.nih.gov>
Date: 2025-06-30 09:48:09 -0400
Commit message:
Commit: 71bc47545064d2ee3ddedfba87f0f71eff2ccafa
Author: xuz1 <xuz@niehs.nih.gov>
Date: 2025-06-30 09:48:09 -0400
Commit message:
bugfix Signed-off-by: xuz1 <xuz@niehs.nih.gov>
Package: ENmix
Commit: 07e1e8f1ad4833935e9e35868ba59f70c0c1e15e
Author: xuz1 <xuz@niehs.nih.gov>
Date: 2025-06-30 09:47:18 -0400
Commit message:
Commit: 07e1e8f1ad4833935e9e35868ba59f70c0c1e15e
Author: xuz1 <xuz@niehs.nih.gov>
Date: 2025-06-30 09:47:18 -0400
Commit message:
bugfix Signed-off-by: xuz1 <xuz@niehs.nih.gov>
Package: dmGsea
Commit: 8e5a1c034f414c437ccf4fef95600ad90e403ece
Author: xuz1 <xuz@niehs.nih.gov>
Date: 2025-06-30 09:45:59 -0400
Commit message:
Commit: 8e5a1c034f414c437ccf4fef95600ad90e403ece
Author: xuz1 <xuz@niehs.nih.gov>
Date: 2025-06-30 09:45:59 -0400
Commit message:
bugfix Signed-off-by: xuz1 <xuz@niehs.nih.gov>
Package: BgeeCall
Commit: 2a2697abef8b92ba0a85feb38515ea8ccba2fa6b
Author: Julien Wollbrett <julien.wollbrett@unil.ch>
Date: 2025-06-30 11:26:40 +0200
Commit message:
Commit: 2a2697abef8b92ba0a85feb38515ea8ccba2fa6b
Author: Julien Wollbrett <julien.wollbrett@unil.ch>
Date: 2025-06-30 11:26:40 +0200
Commit message:
Merge branch 'updated_method' into develop
Package: BgeeCall
Commit: 5f5c65da2800ae8acddc3e909728be7454bfaced
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-04-29 15:44:19 +0200
Commit message:
Commit: 5f5c65da2800ae8acddc3e909728be7454bfaced
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-04-29 15:44:19 +0200
Commit message:
Added a minimum of 20% of intergenic regions kept after deconvolution (avoids rare random changes in KDE comparisons for really low values)
Package: BgeeCall
Commit: 5385bde44a85d793837cbff893b8024cc64b9c03
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-03-21 15:42:31 +0100
Commit message:
Commit: 5385bde44a85d793837cbff893b8024cc64b9c03
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-03-21 15:42:31 +0100
Commit message:
updated each bgeecall functions imports with only the external packages and functions needed. Notably to avoid intersect function being taken from Biostring instead of IRanges
Package: BgeeCall
Commit: 72f206640aca5bfdd5f68af987857752ec2d4be9
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-03-14 17:56:11 +0100
Commit message:
Commit: 72f206640aca5bfdd5f68af987857752ec2d4be9
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-03-14 17:56:11 +0100
Commit message:
Changed general imports to importFrom to be clearer and avoid conflicts
Package: BgeeCall
Commit: b569f47c127b2192b96fcae7aadfcd3b9d4ea991
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-03-14 17:51:33 +0100
Commit message:
Commit: b569f47c127b2192b96fcae7aadfcd3b9d4ea991
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-03-14 17:51:33 +0100
Commit message:
Updated Rd files and added missing ones
Package: BgeeCall
Commit: 163551bf35cc1b07fa422cd45a4a26af1c33e063
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-03-14 17:47:43 +0100
Commit message:
Commit: 163551bf35cc1b07fa422cd45a4a26af1c33e063
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-03-14 17:47:43 +0100
Commit message:
Updated package using roxygen2 and made changes to follow new roxygen2 guidelines such as 'Using @docType package no longer automatically adds a -package alias. Instead document _PACKAGE to get all the defaults for package documentation' and added import.R file for centralized package dependency
Package: BgeeCall
Commit: 20d9de6fb7eaf557de9ee4c70664a0b8839be29c
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-03-14 14:02:57 +0100
Commit message:
Commit: 20d9de6fb7eaf557de9ee4c70664a0b8839be29c
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-03-14 14:02:57 +0100
Commit message:
Merge branch 'updated_method' of github.com:BgeeDB/BgeeCall into updated_method
Package: BgeeCall
Commit: 74ddc72f3cb2ddce1b227dcd977de4c0bca523a3
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-03-14 14:01:36 +0100
Commit message:
Commit: 74ddc72f3cb2ddce1b227dcd977de4c0bca523a3
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-03-14 14:01:36 +0100
Commit message:
Modifed access to to kmer threshold attribute through kallistoMetadata
Package: BgeeCall
Commit: bb7c273ae9e69ec642f3d432ffd55918f155058d
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-03-14 13:49:56 +0100
Commit message:
Commit: bb7c273ae9e69ec642f3d432ffd55918f155058d
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-03-14 13:49:56 +0100
Commit message:
added exception handling when intergenic don't receive reads
Package: BgeeCall
Commit: ce4a2954d9847a37fec8fe0be10a52b50d107a12
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-03-14 13:45:23 +0100
Commit message:
Commit: ce4a2954d9847a37fec8fe0be10a52b50d107a12
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-03-14 13:45:23 +0100
Commit message:
updated pValue merging method
Package: BgeeCall
Commit: 8b30033093666747ae4568c9e3d2ead6adc7b743
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-02-14 11:36:00 +0100
Commit message:
Commit: 8b30033093666747ae4568c9e3d2ead6adc7b743
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-02-14 11:36:00 +0100
Commit message:
Removed unused comment
Package: BgeeCall
Commit: 4e8fd9ca07e7ae411a765a9139f29a7c6be0e3c7
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-01-20 15:25:21 +0100
Commit message:
Commit: 4e8fd9ca07e7ae411a765a9139f29a7c6be0e3c7
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-01-20 15:25:21 +0100
Commit message:
Moved filtering of intergenics with zero reads to after we calculate the ratio of active intergenics
Package: BgeeCall
Commit: 5c935cd1b7b184a306b1d2def42279984e6462aa
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-01-15 15:31:29 +0100
Commit message:
Commit: 5c935cd1b7b184a306b1d2def42279984e6462aa
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-01-15 15:31:29 +0100
Commit message:
Corrected use of correct class attributes (attribute read_size_kmer_threshold is in class myKallisto;etadata and not myAbundanceMetadata)
Package: BgeeCall
Commit: 955f98a5da2f4bfce644704eb8fa3355ad31db28
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-01-14 11:34:07 +0100
Commit message:
Commit: 955f98a5da2f4bfce644704eb8fa3355ad31db28
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2025-01-14 11:34:07 +0100
Commit message:
Removed the -bias option when running kallisto because of compatibility issues with newer version of kallisto 0.50.0
Package: BgeeCall
Commit: adc601deebb53992c6ca246adaec38a9d516f4f8
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-11-12 18:13:30 +0100
Commit message:
Commit: adc601deebb53992c6ca246adaec38a9d516f4f8
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-11-12 18:13:30 +0100
Commit message:
updated read_size_kmer_threshold with the correct class AbundanceMetadata instead of myKallistoMetadata
Package: BgeeCall
Commit: a84a6e27e7d8240a66734b2238cd22226a22de51
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-11-12 17:52:39 +0100
Commit message:
Commit: a84a6e27e7d8240a66734b2238cd22226a22de51
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-11-12 17:52:39 +0100
Commit message:
zero inflation correction with percentage of intergenic receiving reads
Package: BgeeCall
Commit: 017dc981f9a5df15e475b48c87c221de2cab1f48
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-11-12 17:21:17 +0100
Commit message:
Commit: 017dc981f9a5df15e475b48c87c221de2cab1f48
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-11-12 17:21:17 +0100
Commit message:
Added code to retrieve random libraries from SRA for new Species
Package: BgeeCall
Commit: 0a147f17e7eec995756daeec79a2ba26890b5613
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-09-18 15:22:31 +0200
Commit message:
Commit: 0a147f17e7eec995756daeec79a2ba26890b5613
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-09-18 15:22:31 +0200
Commit message:
Added functions for automatic download of gtf and fasta files from taxon ID list
Package: BgeeCall
Commit: 283c11fa2adbdb0fc1dc559948c356a754925191
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-09-17 17:10:43 +0200
Commit message:
Commit: 283c11fa2adbdb0fc1dc559948c356a754925191
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-09-17 17:10:43 +0200
Commit message:
Corrected ensembl metazoa ftp link
Package: BgeeCall
Commit: d751f2122e6960af26d52aeab30cbbdfe5bd4f09
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-09-17 16:29:09 +0200
Commit message:
Commit: d751f2122e6960af26d52aeab30cbbdfe5bd4f09
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-09-17 16:29:09 +0200
Commit message:
Added fasta and gtf file path finder from taxon ID information
Package: BgeeCall
Commit: e8be3a500a45ffaad5dba1467b3d6899ba19a5bb
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-08-20 14:29:12 +0200
Commit message:
Commit: e8be3a500a45ffaad5dba1467b3d6899ba19a5bb
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-08-20 14:29:12 +0200
Commit message:
Added generation of reference intergenic regions by removing outliers found with transcriptomic evidence
Package: BgeeCall
Commit: 950fea9e8737b9c87ad82606c8bc3a68ce24663d
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-08-19 15:49:33 +0200
Commit message:
Commit: 950fea9e8737b9c87ad82606c8bc3a68ce24663d
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-08-19 15:49:33 +0200
Commit message:
Added detection of reference intergenic regions based on summed of mapped reads
Package: BgeeCall
Commit: 62556315d7e480c7c95bdd960c0c542bfc2accf8
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-08-12 16:05:09 +0200
Commit message:
Commit: 62556315d7e480c7c95bdd960c0c542bfc2accf8
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-08-12 16:05:09 +0200
Commit message:
Updated kallisto to use small index depending on the threshold set in the KallistoMetadata instead of a hardcoded 50
Package: BgeeCall
Commit: c61e529fb50cf7f21da7e95e1edb96cf884239ed
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-08-05 12:09:09 +0200
Commit message:
Commit: c61e529fb50cf7f21da7e95e1edb96cf884239ed
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-08-05 12:09:09 +0200
Commit message:
Added generation of intergenic regions fasta file
Package: BgeeCall
Commit: 1140dbc08123231cfbcc45840d1c835d7aa38220
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-08-02 11:06:50 +0200
Commit message:
Commit: 1140dbc08123231cfbcc45840d1c835d7aa38220
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-08-02 11:06:50 +0200
Commit message:
Corrected format error in merging libraries
Package: BgeeCall
Commit: 03277d56f824eac0f9ad55f40787ad962af743ae
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-07-30 11:44:06 +0200
Commit message:
Commit: 03277d56f824eac0f9ad55f40787ad962af743ae
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-07-30 11:44:06 +0200
Commit message:
Corrected generation of initial intergenic regions by associating correct name based on gene_id
Package: BgeeCall
Commit: 18ed0b55a4ae340b51499db3e9412fddbcc0a5a4
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-07-22 16:00:44 +0200
Commit message:
Commit: 18ed0b55a4ae340b51499db3e9412fddbcc0a5a4
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-07-22 16:00:44 +0200
Commit message:
Added generation of initial intergenic regions
Package: BgeeCall
Commit: 2b19ca19bce65136a603fc737d1a241d0afb9f26
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-07-19 15:00:02 +0200
Commit message:
Commit: 2b19ca19bce65136a603fc737d1a241d0afb9f26
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-07-19 15:00:02 +0200
Commit message:
Added a way to retrieve GTF and FASTA files from ensembl directly inside the package
Package: BgeeCall
Commit: 8ccd3d65605bd07a00ffd254fa61588c0b509804
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-07-15 16:55:02 +0200
Commit message:
Commit: 8ccd3d65605bd07a00ffd254fa61588c0b509804
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-07-15 16:55:02 +0200
Commit message:
Added weighted pValue merging option for both the mean and median method
Package: BgeeCall
Commit: 563dcc0257b251a10093d734cc462ad2e3b96d90
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-07-15 16:38:33 +0200
Commit message:
Commit: 563dcc0257b251a10093d734cc462ad2e3b96d90
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-07-15 16:38:33 +0200
Commit message:
Removed teh second method (Tobit) option for calling genes present or absent
Package: BgeeCall
Commit: 56885cce71a56e2839d397ecf0b47883b2040f8b
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-04-08 16:52:59 +0200
Commit message:
Commit: 56885cce71a56e2839d397ecf0b47883b2040f8b
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-04-08 16:52:59 +0200
Commit message:
Added outliers removal to intergenic abundances using Tukey's method (interquantile range)
Package: BgeeCall
Commit: 18741f7f785abeb4ff2f2d2ea08acef198e31f83
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-04-04 16:36:06 +0200
Commit message:
Commit: 18741f7f785abeb4ff2f2d2ea08acef198e31f83
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-04-04 16:36:06 +0200
Commit message:
Changed default threshold for read size to avoid using kmer of 15 in kallisto as default option
Package: BgeeCall
Commit: 848a2fce64ae21943d743afc9264f7dc863fd0f4
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-19 15:42:55 +0100
Commit message:
Commit: 848a2fce64ae21943d743afc9264f7dc863fd0f4
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-19 15:42:55 +0100
Commit message:
corrected error collect_padjValues not found
Package: BgeeCall
Commit: 6f8aa99ce14e5e77aa9edd862f5e325b093fb6c2
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-18 14:56:04 +0100
Commit message:
Commit: 6f8aa99ce14e5e77aa9edd862f5e325b093fb6c2
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-18 14:56:04 +0100
Commit message:
Fixed argument error in pvalue merging
Package: BgeeCall
Commit: 0296b4b4961b8c23d32e6c11b2852db8049e0642
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-18 14:52:02 +0100
Commit message:
Commit: 0296b4b4961b8c23d32e6c11b2852db8049e0642
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-18 14:52:02 +0100
Commit message:
removed the taking of the minimum pValue for merging approches
Package: BgeeCall
Commit: e188f83913da524d41e86f872e0a3f796e5b3d55
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-18 14:29:04 +0100
Commit message:
Commit: e188f83913da524d41e86f872e0a3f796e5b3d55
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-18 14:29:04 +0100
Commit message:
resolved Pvalue matrix bug
Package: BgeeCall
Commit: 412105ac491bf6027f27e2af74f6b0fe9ac8d2aa
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-18 12:54:01 +0100
Commit message:
Commit: 412105ac491bf6027f27e2af74f6b0fe9ac8d2aa
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-18 12:54:01 +0100
Commit message:
modified read size threshold for small kmer use
Package: BgeeCall
Commit: 36642ca6de85804f2baff1083e80836fe961a950
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-13 12:28:21 +0100
Commit message:
Commit: 36642ca6de85804f2baff1083e80836fe961a950
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-13 12:28:21 +0100
Commit message:
Corrected parenthesis bug
Package: BgeeCall
Commit: 1c87168e090f8cf771f3532e8b602875815ae6d4
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-12 17:25:23 +0100
Commit message:
Commit: 1c87168e090f8cf771f3532e8b602875815ae6d4
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-12 17:25:23 +0100
Commit message:
updated functions headers
Package: BgeeCall
Commit: d4e843ee13dc6018d65168cf808f2ec58abe50ca
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-12 17:12:06 +0100
Commit message:
Commit: d4e843ee13dc6018d65168cf808f2ec58abe50ca
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-12 17:12:06 +0100
Commit message:
Added pValue merging methods (Mean and Median)
Package: BgeeCall
Commit: 798c5596dd0a0a9f832577264bdbc77d54a0af3f
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-12 16:31:35 +0100
Commit message:
Commit: 798c5596dd0a0a9f832577264bdbc77d54a0af3f
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-12 16:31:35 +0100
Commit message:
Added new pvalue caclulation method
Package: BgeeCall
Commit: 3fca5e033b1e7f6ad0659d0fec3985fcf6d861df
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-12 10:34:07 +0100
Commit message:
Commit: 3fca5e033b1e7f6ad0659d0fec3985fcf6d861df
Author: Alessandro Brandulas Cammarata <alessandro.brandulas.cammarata@gmail.com>
Date: 2024-03-12 10:34:07 +0100
Commit message:
merged with master
Package: BgeeCall
Commit: 63ff8036d9d2a0fd3249fec104d54ffea1ec1a9e
Author: smoretti <smoretti@users.noreply.github.com>
Date: 2023-11-07 17:31:28 +0100
Commit message:
Commit: 63ff8036d9d2a0fd3249fec104d54ffea1ec1a9e
Author: smoretti <smoretti@users.noreply.github.com>
Date: 2023-11-07 17:31:28 +0100
Commit message:
Add Mastodon
Package: BgeeCall
Commit: 53cc083ac7e21a430cfaeb55f2314927589ed5a4
Author: Julien <julien.wollbrett@gmail.com>
Date: 2022-09-01 09:59:39 +0200
Commit message:
Commit: 53cc083ac7e21a430cfaeb55f2314927589ed5a4
Author: Julien <julien.wollbrett@gmail.com>
Date: 2022-09-01 09:59:39 +0200
Commit message:
Merge branch 'RELEASE_3_15'
Package: BgeeCall
Commit: 7ea77a983152184b5698519f90e467d9eaa70e7e
Author: Julien <julien.wollbrett@gmail.com>
Date: 2022-08-25 09:48:20 +0200
Commit message:
Commit: 7ea77a983152184b5698519f90e467d9eaa70e7e
Author: Julien <julien.wollbrett@gmail.com>
Date: 2022-08-25 09:48:20 +0200
Commit message:
bump version
Package: BgeeCall
Commit: d0c19e4d32755aed3baf4a1e28f2119088e75af2
Author: Julien <julien.wollbrett@gmail.com>
Date: 2022-08-24 23:56:43 +0200
Commit message:
Commit: d0c19e4d32755aed3baf4a1e28f2119088e75af2
Author: Julien <julien.wollbrett@gmail.com>
Date: 2022-08-24 23:56:43 +0200
Commit message:
better manage absence of fastq files
Package: BgeeCall
Commit: fac6f5892dee03ea0fd3fddd3ba63f710a536a4b
Author: Julien <julien.wollbrett@gmail.com>
Date: 2022-08-24 23:52:30 +0200
Commit message:
Commit: fac6f5892dee03ea0fd3fddd3ba63f710a536a4b
Author: Julien <julien.wollbrett@gmail.com>
Date: 2022-08-24 23:52:30 +0200
Commit message:
Merge branch 'BIOC_master'
Package: BgeeCall
Commit: 3b9fa70a9eca73f0c8d7af7aada1d85099434970
Author: Julien <julien.wollbrett@gmail.com>
Date: 2022-05-19 15:21:50 +0200
Commit message:
Commit: 3b9fa70a9eca73f0c8d7af7aada1d85099434970
Author: Julien <julien.wollbrett@gmail.com>
Date: 2022-05-19 15:21:50 +0200
Commit message:
updated URL to access ftp
Package: BgeeCall
Commit: c1ecc5b3bea7f8b4134b6018e4d6961f210bf61d
Author: Julien <julien.wollbrett@gmail.com>
Date: 2022-05-05 16:40:34 +0200
Commit message:
Commit: c1ecc5b3bea7f8b4134b6018e4d6961f210bf61d
Author: Julien <julien.wollbrett@gmail.com>
Date: 2022-05-05 16:40:34 +0200
Commit message:
bump version
Package: BgeeCall
Commit: 034b938faa1a8c09bfe4ed6fdac75772dafed926
Author: Julien <julien.wollbrett@gmail.com>
Date: 2022-05-05 16:35:48 +0200
Commit message:
Commit: 034b938faa1a8c09bfe4ed6fdac75772dafed926
Author: Julien <julien.wollbrett@gmail.com>
Date: 2022-05-05 16:35:48 +0200
Commit message:
add license file
Package: BgeeCall
Commit: 1ff15ad21c1ce973ef60ba2adcfdbda4ad40dc68
Author: Julien <julien.wollbrett@gmail.com>
Date: 2022-05-05 14:38:37 +0200
Commit message:
Commit: 1ff15ad21c1ce973ef60ba2adcfdbda4ad40dc68
Author: Julien <julien.wollbrett@gmail.com>
Date: 2022-05-05 14:38:37 +0200
Commit message:
rename intergenic directory
Package: BgeeCall
Commit: 2c89b73b2df8767548cacaba2eae197f08c17b4a
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2022-04-26 16:01:54 +0000
Commit message:
Commit: 2c89b73b2df8767548cacaba2eae197f08c17b4a
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2022-04-26 16:01:54 +0000
Commit message:
bump x.y.z version to odd y following creation of RELEASE_3_15 branch
Package: BgeeCall
Commit: 7e9e5dc0cbbac42ad56c62026dda3cc561ec9190
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2022-04-26 16:01:54 +0000
Commit message:
Commit: 7e9e5dc0cbbac42ad56c62026dda3cc561ec9190
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2022-04-26 16:01:54 +0000
Commit message:
bump x.y.z version to even y prior to creation of RELEASE_3_15 branch
Package: BgeeCall
Commit: 1593d1f57f8558b9812dfd106617347c17cdc338
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-10-26 16:56:46 +0000
Commit message:
Commit: 1593d1f57f8558b9812dfd106617347c17cdc338
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-10-26 16:56:46 +0000
Commit message:
bump x.y.z version to odd y following creation of RELEASE_3_14 branch
Package: BgeeCall
Commit: 0e33fa9a57de317cd879a2cb4c6b95efbbb4659e
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-10-26 16:56:46 +0000
Commit message:
Commit: 0e33fa9a57de317cd879a2cb4c6b95efbbb4659e
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-10-26 16:56:46 +0000
Commit message:
bump x.y.z version to even y prior to creation of RELEASE_3_14 branch
Package: BgeeCall
Commit: 306bb5de93647ff41f7cbd23fab09f6fff1ee2cb
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-05-19 16:48:49 +0000
Commit message:
Commit: 306bb5de93647ff41f7cbd23fab09f6fff1ee2cb
Author: Nitesh Turaga <nitesh.turaga@gmail.com>
Date: 2021-05-19 16:48:49 +0000
Commit message:
bump x.y.z version to odd y following creation of RELEASE_3_13 branch
Package: BgeeCall
Commit: d7e42c7184281bd1651a2cc9605845f21cd0217c
Author: smoretti <smoretti@users.noreply.github.com>
Date: 2021-10-19 15:15:04 +0200
Commit message:
Commit: d7e42c7184281bd1651a2cc9605845f21cd0217c
Author: smoretti <smoretti@users.noreply.github.com>
Date: 2021-10-19 15:15:04 +0200
Commit message:
Add badges
Package: BgeeCall
Commit: 1a29bd5f5bb29e89cb713864e723289993db9aa1
Author: smoretti <smoretti@users.noreply.github.com>
Date: 2021-09-22 15:28:40 +0200
Commit message:
Commit: 1a29bd5f5bb29e89cb713864e723289993db9aa1
Author: smoretti <smoretti@users.noreply.github.com>
Date: 2021-09-22 15:28:40 +0200
Commit message:
Add a GPL-3.0 license file
Package: BgeeCall
Commit: 1d4b16effddb3821b07157d758dc297673b94c23
Author: Julien <julien.wollbrett@gmail.com>
Date: 2021-06-16 15:56:14 +0200
Commit message:
Commit: 1d4b16effddb3821b07157d758dc297673b94c23
Author: Julien <julien.wollbrett@gmail.com>
Date: 2021-06-16 15:56:14 +0200
Commit message:
Merge branch 'RELEASE_3_13'
Package: BgeeCall
Commit: 1630411a2c32c0b74cd3a7bd6991b926d2c7e001
Author: Julien <julien.wollbrett@gmail.com>
Date: 2020-11-09 14:20:16 +0100
Commit message:
Commit: 1630411a2c32c0b74cd3a7bd6991b926d2c7e001
Author: Julien <julien.wollbrett@gmail.com>
Date: 2020-11-09 14:20:16 +0100
Commit message:
Merge branch 'develop'
Package: BgeeCall
Commit: 0dbbf56233d78c270caee914cb1df6f847087b0d
Author: Julien <julien.wollbrett@gmail.com>
Date: 2020-05-12 17:38:59 +0200
Commit message:
Commit: 0dbbf56233d78c270caee914cb1df6f847087b0d
Author: Julien <julien.wollbrett@gmail.com>
Date: 2020-05-12 17:38:59 +0200
Commit message:
bump version
Package: MsBackendMassbank
Commit: 4205ac6fbbd8848bff5d30c5a81cb2ede11c1642
Author: Johannes Rainer <johannes.rainer@gmail.com>
Date: 2025-06-30 13:00:50 +0200
Commit message:
Commit: 4205ac6fbbd8848bff5d30c5a81cb2ede11c1642
Author: Johannes Rainer <johannes.rainer@gmail.com>
Date: 2025-06-30 13:00:50 +0200
Commit message:
ci: bump version and fix ci
Package: MsBackendMassbank
Commit: ef4423fd29f463a2fe56d408ee867fd6c9e0d501
Author: Johannes Rainer <johannes.rainer@gmail.com>
Date: 2025-06-30 11:53:30 +0200
Commit message:
Commit: ef4423fd29f463a2fe56d408ee867fd6c9e0d501
Author: Johannes Rainer <johannes.rainer@gmail.com>
Date: 2025-06-30 11:53:30 +0200
Commit message:
Merge remote-tracking branch 'upstream/devel'
Package: MsBackendMassbank
Commit: ac4194c6c3ef44b40fc2b89e5f0437cab9fa3763
Author: Johannes Rainer <5506112+jorainer@users.noreply.github.com>
Date: 2025-06-30 11:52:49 +0200
Commit message:
Commit: ac4194c6c3ef44b40fc2b89e5f0437cab9fa3763
Author: Johannes Rainer <5506112+jorainer@users.noreply.github.com>
Date: 2025-06-30 11:52:49 +0200
Commit message:
Merge pull request #57 from rformassspectrometry/valid_results_main added processing comment to listcolumns
Package: MsBackendMassbank
Commit: 5a5f4d6dc162b36d7275e1167d80cd4d4928f029
Author: Michael Witting <michael.witting@helmholtz-muenchen.de>
Date: 2025-06-29 11:30:11 +0200
Commit message:
Commit: 5a5f4d6dc162b36d7275e1167d80cd4d4928f029
Author: Michael Witting <michael.witting@helmholtz-muenchen.de>
Date: 2025-06-29 11:30:11 +0200
Commit message:
added processing comment to listcolumns
Package: extraChIPs
Commit: 4a122fd1713f5524878f5403f29d93c3d23dafff
Author: Stevie Ped <stephen.pederson.au@gmail.com>
Date: 2025-06-30 10:38:26 +0930
Commit message:
Commit: 4a122fd1713f5524878f5403f29d93c3d23dafff
Author: Stevie Ped <stephen.pederson.au@gmail.com>
Date: 2025-06-30 10:38:26 +0930
Commit message:
Rebuilt documentation except for vignette
Package: gDNAx
Commit: edafbedf86a1a63975de2bc103dcff016c92acd5
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-06-28 18:11:22 -0400
Commit message:
Commit: edafbedf86a1a63975de2bc103dcff016c92acd5
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-06-28 18:11:22 -0400
Commit message:
Add Seqinfo to imports in DESCRIPTION
Package: GENESIS
Commit: 7eca724332b69e73ddaeedab047fb59d6c038ecb
Author: Stephanie M. Gogarten <sdmorris@uw.edu>
Date: 2025-06-28 14:58:55 -0700
Commit message:
Commit: 7eca724332b69e73ddaeedab047fb59d6c038ecb
Author: Stephanie M. Gogarten <sdmorris@uw.edu>
Date: 2025-06-28 14:58:55 -0700
Commit message:
Merge pull request #126 from UW-GAC/fix_build Fix build
Package: GENESIS
Commit: b9d9437158ff5428235e575927e58e60d3254974
Author: Stephanie M. Gogarten <sdmorris@uw.edu>
Date: 2025-06-26 12:10:25 -0700
Commit message:
Commit: b9d9437158ff5428235e575927e58e60d3254974
Author: Stephanie M. Gogarten <sdmorris@uw.edu>
Date: 2025-06-26 12:10:25 -0700
Commit message:
renameSeqlevels is now exported by GenomeInfoDb package
Package: gDNAx
Commit: cd9891ef11ffc05e417be4adea15b0a146811278
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-06-27 23:08:01 -0400
Commit message:
Commit: cd9891ef11ffc05e417be4adea15b0a146811278
Author: Robert Castelo <robert.castelo@upf.edu>
Date: 2025-06-27 23:08:01 -0400
Commit message:
Move some GenomeInfoDb imports to Seqinfo
Package: netZooR
Commit: e4fda96c93d5d26995359f64b1cf05c55e4168be
Author: Tara Eicher <taraeicher@yahoo.com>
Date: 2025-06-27 14:11:42 -0400
Commit message:
Commit: e4fda96c93d5d26995359f64b1cf05c55e4168be
Author: Tara Eicher <taraeicher@yahoo.com>
Date: 2025-06-27 14:11:42 -0400
Commit message:
Added curl download
Package: Basic4Cseq
Commit: d8d5cae4abf110acf39a7e0ac58a1184a092a698
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-06-27 10:04:06 -0700
Commit message:
Commit: d8d5cae4abf110acf39a7e0ac58a1184a092a698
Author: Hervé Pagès <hpages.on.github@gmail.com>
Date: 2025-06-27 10:04:06 -0700
Commit message:
Basic4Cseq 1.45.1 Update serialized Data4Cseq instances. Needed because of Seqinfo move from GenomeInfoDb package to new Seqinfo package.