############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data spicyWorkflow ### ############################################################################## ############################################################################## * checking for file ‘spicyWorkflow/DESCRIPTION’ ... OK * preparing ‘spicyWorkflow’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘spicyWorkflow.Rmd’ using rmarkdown 2025-09-26 14:54:16.420 R[91609:430612788] XType: com.apple.fonts is not accessible. 2025-09-26 14:54:16.420 R[91609:430612788] XType: XTFontStaticRegistry is enabled. Quitting from spicyWorkflow.Rmd:693-703 [unnamed-chunk-36] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `$<-.data.frame`: ! replacement has 21 rows, data has 155840 --- Backtrace: ▆ 1. └─Statial::getDistances(...) 2. ├─base::`$<-`(`*tmp*`, "cellID", value = ``) 3. └─base::`$<-.data.frame`(`*tmp*`, "cellID", value = ``) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'spicyWorkflow.Rmd' failed with diagnostics: replacement has 21 rows, data has 155840 --- failed re-building ‘spicyWorkflow.Rmd’ SUMMARY: processing the following file failed: ‘spicyWorkflow.Rmd’ Error: Vignette re-building failed. Execution halted