############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data highthroughputassays ### ############################################################################## ############################################################################## * checking for file ‘highthroughputassays/DESCRIPTION’ ... OK * preparing ‘highthroughputassays’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘high-throughput-assays.Rmd’ using rmarkdown Quitting from high-throughput-assays.Rmd:80-90 [unnamed-chunk-5] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `add_ggcyto()`: ! object '+.gg' not found --- Backtrace: ▆ 1. ├─ggcyto::ggcyto(gs, aes(x = CD3, y = SSC)) 2. └─ggcyto:::ggcyto.GatingSet(gs, aes(x = CD3, y = SSC)) 3. └─ggcyto:::ggcyto.flowSet(data = data, mapping = mapping, ...) 4. ├─p + ggcyto_par_default() 5. └─p + ggcyto_par_default() 6. └─ggcyto:::add_ggcyto(e1, e2, e2name) 7. ├─e1 + e2.new 8. └─e1 + e2.new 9. └─ggcyto:::add_ggcyto(e1, e2, e2name) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'high-throughput-assays.Rmd' failed with diagnostics: object '+.gg' not found --- failed re-building ‘high-throughput-assays.Rmd’ SUMMARY: processing the following file failed: ‘high-throughput-assays.Rmd’ Error: Vignette re-building failed. Execution halted