############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data depmap ### ############################################################################## ############################################################################## * checking for file ‘depmap/DESCRIPTION’ ... OK * preparing ‘depmap’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘depmap.Rmd’ using rmarkdown Quitting from depmap.Rmd:104-106 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! failed to load resource name: EH3080 title: rnai_19Q3 reason: 1 resources failed to download --- Backtrace: ▆ 1. └─depmap::depmap_rnai() 2. └─depmap:::depmap_data_loading("rnai") 3. ├─eh[[eh_name]] 4. └─eh[[eh_name]] 5. └─ExperimentHub (local) .local(x, i, j = j, ...) 6. ├─methods::callNextMethod(...) 7. │ └─base::eval(call, callEnv) 8. │ └─base::eval(call, callEnv) 9. └─AnnotationHub (local) .nextMethod(...) 10. └─AnnotationHub (local) .local(x, i, j = j, ...) 11. └─AnnotationHub:::.Hub_get1(...) 12. └─base::tryCatch(...) 13. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 14. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 15. └─value[[3L]](cond) 16. └─base::tryCatch(...) 17. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 18. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 19. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'depmap.Rmd' failed with diagnostics: failed to load resource name: EH3080 title: rnai_19Q3 reason: 1 resources failed to download --- failed re-building ‘depmap.Rmd’ --- re-building ‘using_depmap.Rmd’ using rmarkdown Quitting from using_depmap.Rmd:64-75 [load_data] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! failed to load resource name: EH3086 title: metadata_19Q3 reason: 1 resources failed to download --- Backtrace: ▆ 1. ├─eh[["EH3086"]] 2. └─eh[["EH3086"]] 3. └─ExperimentHub (local) .local(x, i, j = j, ...) 4. ├─methods::callNextMethod(...) 5. │ └─base::eval(call, callEnv) 6. │ └─base::eval(call, callEnv) 7. └─AnnotationHub (local) .nextMethod(...) 8. └─AnnotationHub (local) .local(x, i, j = j, ...) 9. └─AnnotationHub:::.Hub_get1(...) 10. └─base::tryCatch(...) 11. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 12. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 13. └─value[[3L]](cond) 14. └─base::tryCatch(...) 15. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 16. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 17. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'using_depmap.Rmd' failed with diagnostics: failed to load resource name: EH3086 title: metadata_19Q3 reason: 1 resources failed to download --- failed re-building ‘using_depmap.Rmd’ SUMMARY: processing the following files failed: ‘depmap.Rmd’ ‘using_depmap.Rmd’ Error: Vignette re-building failed. Execution halted