############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedTCGAData ### ############################################################################## ############################################################################## * checking for file ‘curatedTCGAData/DESCRIPTION’ ... OK * preparing ‘curatedTCGAData’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘curatedTCGAData.Rmd’ using rmarkdown Quitting from curatedTCGAData.Rmd:130-134 [download-acc] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! failed to load resource name: EH4738 title: ACC_CNVSNP-20160128 reason: 1 resources failed to download --- Backtrace: ▆ 1. └─curatedTCGAData::curatedTCGAData(...) 2. └─curatedTCGAData:::.getResources(...) 3. └─base::lapply(...) 4. └─curatedTCGAData (local) FUN(X[[i]], ...) 5. ├─query(ExperimentHub, res)[[1L]] 6. └─query(ExperimentHub, res)[[1L]] 7. └─ExperimentHub (local) .local(x, i, j = j, ...) 8. ├─methods::callNextMethod(...) 9. │ └─base::eval(call, callEnv) 10. │ └─base::eval(call, callEnv) 11. └─AnnotationHub (local) .nextMethod(...) 12. └─AnnotationHub (local) .local(x, i, j = j, ...) 13. └─AnnotationHub:::.Hub_get1(...) 14. └─base::tryCatch(...) 15. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 16. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 17. └─value[[3L]](cond) 18. └─base::tryCatch(...) 19. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 20. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 21. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'curatedTCGAData.Rmd' failed with diagnostics: failed to load resource name: EH4738 title: ACC_CNVSNP-20160128 reason: 1 resources failed to download --- failed re-building ‘curatedTCGAData.Rmd’ SUMMARY: processing the following file failed: ‘curatedTCGAData.Rmd’ Error: Vignette re-building failed. Execution halted