############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data NanoporeRNASeq ### ############################################################################## ############################################################################## * checking for file ‘NanoporeRNASeq/DESCRIPTION’ ... OK * preparing ‘NanoporeRNASeq’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘NanoporeRNASeq.Rmd’ using rmarkdown Quitting from NanoporeRNASeq.Rmd:58-71 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `validObject()`: ! invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL" --- Backtrace: ▆ 1. ├─ggplot2::autoplot(range, aes(col = strand), group.selfish = TRUE) 2. └─ggbio::autoplot(range, aes(col = strand), group.selfish = TRUE) 3. └─ggbio (local) .local(object, ...) 4. ├─BiocGenerics::do.call(ggplot, c(list(data = object), list(aes.res))) 5. ├─base::do.call(ggplot, c(list(data = object), list(aes.res))) 6. ├─ggplot2 (local) ``(data = ``, ``) 7. └─ggbio:::ggplot.Vector(data = ``, ``) 8. └─ggbio::GGbio(gg, data = data) 9. ├─BiocGenerics::do.call(...) 10. ├─base::do.call(...) 11. └─methods (local) ``(...) 12. ├─methods::initialize(value, ...) 13. └─methods::initialize(value, ...) 14. └─methods::validObject(.Object) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'NanoporeRNASeq.Rmd' failed with diagnostics: invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL" --- failed re-building ‘NanoporeRNASeq.Rmd’ SUMMARY: processing the following file failed: ‘NanoporeRNASeq.Rmd’ Error: Vignette re-building failed. Execution halted