############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioPlex ### ############################################################################## ############################################################################## * checking for file ‘BioPlex/DESCRIPTION’ ... OK * preparing ‘BioPlex’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘BasicChecks.Rmd’ using rmarkdown Quitting from BasicChecks.Rmd:180-183 [cnv-seq] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! download failed; see warnings() --- Backtrace: ▆ 1. └─BioPlex::getHEK293GenomeTrack(track = "cnv.hmm", cell.line = "293T") 2. └─BioPlex:::.getResourceFromCache2(rname) 3. ├─BiocFileCache::bfcdownload(bfc, rid, ask = FALSE, ...) 4. └─BiocFileCache::bfcdownload(bfc, rid, ask = FALSE, ...) 5. └─BiocFileCache:::.util_download_and_rename(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'BasicChecks.Rmd' failed with diagnostics: download failed; see warnings() --- failed re-building ‘BasicChecks.Rmd’ --- re-building ‘BioPlex.Rmd’ using rmarkdown Quitting from BioPlex.Rmd:254-257 [cnv] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! download failed; see warnings() --- Backtrace: ▆ 1. └─BioPlex::getHEK293GenomeTrack(track = "cnv.hmm", cell.line = "293T") 2. └─BioPlex:::.getResourceFromCache2(rname) 3. ├─BiocFileCache::bfcdownload(bfc, rid, ask = FALSE, ...) 4. └─BiocFileCache::bfcdownload(bfc, rid, ask = FALSE, ...) 5. └─BiocFileCache:::.util_download_and_rename(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'BioPlex.Rmd' failed with diagnostics: download failed; see warnings() --- failed re-building ‘BioPlex.Rmd’ SUMMARY: processing the following files failed: ‘BasicChecks.Rmd’ ‘BioPlex.Rmd’ Error: Vignette re-building failed. Execution halted