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### Running command:
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###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD check --install=check:sesame.install-out.txt --library=/home/rapidbuild/bbs-3.22-bioc-rapid/R/site-library --timings sesame_1.27.0.tar.gz
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* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/sesame.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘sesame/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘sesame’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘sesame’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                user system elapsed
imputeBetasByGenomicNeighbors 26.939  0.648  34.889
inferSex                      17.450  0.245  22.957
sesameQC_calcStats            15.124  0.033  22.080
inferSpecies                  13.476  0.825  17.617
sesameQC_plotHeatSNPs         13.738  0.048  16.109
imputeBetas                   13.334  0.239  18.413
ELBAR                         11.505  0.340  12.872
diffRefSet                    10.926  0.243  11.984
sesameQC_plotBar               9.966  0.116  10.773
getRefSet                      8.826  0.069   9.730
compareReference               7.998  0.154   9.101
compareMouseStrainReference    7.685  0.344   8.816
matchDesign                    7.654  0.050   9.183
sesameQC_plotBetaByDesign      6.977  0.001   7.694
DMR                            6.424  0.183   8.313
estimateLeukocyte              6.109  0.121   7.160
visualizeGene                  6.085  0.131   7.152
inferStrain                    5.175  0.497   7.291
DML                            5.149  0.207   5.717
dyeBiasCorrMostBalanced        5.130  0.111   6.133
inferTissue                    4.894  0.143   6.181
sdf_read_table                 4.886  0.097   5.520
deidentify                     4.041  0.067   5.432
createUCSCtrack                3.744  0.130   5.214
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK