############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationDbi ### ############################################################################## ############################################################################## * checking for file ‘AnnotationDbi/DESCRIPTION’ ... OK * preparing ‘AnnotationDbi’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘AnnotationDbi.Rnw’ using knitr --- finished re-building ‘AnnotationDbi.Rnw’ --- re-building ‘IntroToAnnotationPackages.Rnw’ using knitr Quitting from IntroToAnnotationPackages.Rnw:326-336 [selectTxDb] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! package 'GenomicFeatures' required by 'TxDb.Hsapiens.UCSC.hg19.knownGene' could not be found --- Backtrace: x 1. \-base::library(TxDb.Hsapiens.UCSC.hg19.knownGene) 2. \-base::.getRequiredPackages2(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'IntroToAnnotationPackages.Rnw' failed with diagnostics: package 'GenomicFeatures' required by 'TxDb.Hsapiens.UCSC.hg19.knownGene' could not be found --- failed re-building ‘IntroToAnnotationPackages.Rnw’ SUMMARY: processing the following file failed: ‘IntroToAnnotationPackages.Rnw’ Error: Vignette re-building failed. Execution halted