############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data smoppix ### ############################################################################## ############################################################################## * checking for file ‘smoppix/DESCRIPTION’ ... OK * preparing ‘smoppix’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to process help pages Loading required namespace: smoppix * saving partial Rd database * creating vignettes ... ERROR --- re-building ‘smoppixVignette.Rmd’ using rmarkdown 2025-11-21 10:34:46.131 R[34978:33331610] XType: Using static font registry. Quitting from smoppixVignette.Rmd:349-352 [enggrads] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `reducer$value.cache[[as.character(idx)]] <- values`: ! wrong args for environment subassignment --- Backtrace: ▆ 1. └─smoppix::estGradients(hypEng[seq_len(2), ], features = getFeatures(hypEng)[seq_len(3)]) 2. └─smoppix::loadBalanceBplapply(...) 3. ├─base::unsplit(...) 4. │ └─base::is.data.frame(value[[1L]]) 5. ├─BiocParallel (local) loopFunMatched(...) 6. └─BiocParallel (local) loopFunMatched(...) 7. ├─BiocParallel::bplapply(...) 8. └─BiocParallel::bplapply(...) 9. └─BiocParallel:::.bpinit(...) 10. ├─BiocParallel::bploop(...) 11. └─BiocParallel:::bploop.lapply(...) 12. └─BiocParallel:::.bploop_impl(...) 13. └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM) 14. ├─BiocParallel:::.reducer_add(reducer, njob, value) 15. └─BiocParallel:::.reducer_add(reducer, njob, value) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'smoppixVignette.Rmd' failed with diagnostics: wrong args for environment subassignment --- failed re-building ‘smoppixVignette.Rmd’ SUMMARY: processing the following file failed: ‘smoppixVignette.Rmd’ Error: Vignette re-building failed. Execution halted