############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scds ### ############################################################################## ############################################################################## * checking for file ‘scds/DESCRIPTION’ ... OK * preparing ‘scds’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘scds.Rmd’ using rmarkdown 2025-12-08 23:08:44.338 R[71031:102650683] XType: com.apple.fonts is not accessible. 2025-12-08 23:08:44.342 R[71031:102650683] XType: XTFontStaticRegistry is enabled. Quitting from scds.Rmd:87-97 [scds] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `xgboost()`: ! argument "y" is missing, with no default --- Backtrace: ▆ 1. └─scds::bcds(sce, retRes = TRUE, verb = TRUE) 2. └─xgboost::xgboost(...) 3. └─xgboost:::process.y.margin.and.objective(...) 4. └─base::NROW(y) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'scds.Rmd' failed with diagnostics: argument "y" is missing, with no default --- failed re-building ‘scds.Rmd’ SUMMARY: processing the following file failed: ‘scds.Rmd’ Error: Vignette re-building failed. Execution halted