############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 rfaRm ### ############################################################################## ############################################################################## * checking for file ‘rfaRm/DESCRIPTION’ ... OK * preparing ‘rfaRm’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘rfaRm.Rmd’ using rmarkdown Quitting from rfaRm.Rmd:166-170 [unnamed-chunk-11] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `writeLines()`: ! can only write character objects --- Backtrace: ▆ 1. └─rfaRm::rfamSeedAlignment(...) 2. └─base::writeLines(alignment, con = filename) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'rfaRm.Rmd' failed with diagnostics: can only write character objects --- failed re-building ‘rfaRm.Rmd’ SUMMARY: processing the following file failed: ‘rfaRm.Rmd’ Error: Vignette re-building failed. Execution halted