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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data qPLEXanalyzer
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* checking for file ‘qPLEXanalyzer/DESCRIPTION’ ... OK
* preparing ‘qPLEXanalyzer’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘qPLEXanalyzer.Rmd’ using rmarkdown
2025-11-02 18:24:05.958 R[29013:708498354] XType: com.apple.fonts is not accessible.
2025-11-02 18:24:05.958 R[29013:708498354] XType: XTFontStaticRegistry is enabled.

Quitting from qPLEXanalyzer.Rmd:427-433 [diffexp]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! 'DSG.FA - FA' is not a valid contrast. Available contrasts:
       DSG.FA_vs_FA
---
Backtrace:
    ▆
 1. └─qPLEXanalyzer::getContrastResults(...)
 2.   └─qPLEXanalyzer:::checkArg_getContrastResults(...)
 3.     └─assertthat::assert_that(is_validContrast(contrast, diffstats))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'qPLEXanalyzer.Rmd' failed with diagnostics:
'DSG.FA - FA' is not a valid contrast. Available contrasts:
       DSG.FA_vs_FA
--- failed re-building ‘qPLEXanalyzer.Rmd’

SUMMARY: processing the following file failed:
  ‘qPLEXanalyzer.Rmd’

Error: Vignette re-building failed.
Execution halted