############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data igblastr ### ############################################################################## ############################################################################## * checking for file ‘igblastr/DESCRIPTION’ ... OK * preparing ‘igblastr’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘igblastr_overview.Rmd’ using rmarkdown Quitting from igblastr_overview.Rmd:110-113 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.stop_on_no_precompiled_ncbi_igblast()`: ! No pre-compiled IgBLAST program available at ftp.ncbi.nih.gov/blast/executables/igblast/release/LATEST/ for Linux-aarch64. If there's an existing IgBLAST installation on your machine, please set environment variable IGBLAST_ROOT to point to it. Otherwise, please perform your own installation of IgBLAST e.g. by downloading and compiling the latest source tarball from ftp.ncbi.nih.gov/blast/executables/igblast/release/LATEST/ (note that compilation can take between 45 min and 1 hour!), then point IGBLAST_ROOT to it. See '?IGBLAST_ROOT' for more information. --- Backtrace: ▆ 1. └─igblastr::install_igblast() 2. └─igblastr:::.get_precompiled_ncbi_igblast_name(ftp_dir, OS_arch) 3. └─igblastr:::.stop_on_no_precompiled_ncbi_igblast(ftp_dir, OS_arch) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'igblastr_overview.Rmd' failed with diagnostics: No pre-compiled IgBLAST program available at ftp.ncbi.nih.gov/blast/executables/igblast/release/LATEST/ for Linux-aarch64. If there's an existing IgBLAST installation on your machine, please set environment variable IGBLAST_ROOT to point to it. Otherwise, please perform your own installation of IgBLAST e.g. by downloading and compiling the latest source tarball from ftp.ncbi.nih.gov/blast/executables/igblast/release/LATEST/ (note that compilation can take between 45 min and 1 hour!), then point IGBLAST_ROOT to it. See '?IGBLAST_ROOT' for more information. --- failed re-building ‘igblastr_overview.Rmd’ SUMMARY: processing the following file failed: ‘igblastr_overview.Rmd’ Error: Vignette re-building failed. Execution halted