############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 gDNAx ### ############################################################################## ############################################################################## * checking for file ‘gDNAx/DESCRIPTION’ ... OK * preparing ‘gDNAx’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘gDNAx.Rmd’ using rmarkdown Quitting from gDNAx.Rmd:100-106 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `.checkBamFiles()`: ! argument 'bfl' should be either a string character vectorof BAM file names or a 'BamFileList' object --- Backtrace: ▆ 1. └─gDNAx::gDNAdx(bamfiles, txdb) 2. └─gDNAx:::.checkBamFiles(bfl) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'gDNAx.Rmd' failed with diagnostics: argument 'bfl' should be either a string character vectorof BAM file names or a 'BamFileList' object --- failed re-building ‘gDNAx.Rmd’ SUMMARY: processing the following file failed: ‘gDNAx.Rmd’ Error: Vignette re-building failed. Execution halted