##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data cfTools
###
##############################################################################
##############################################################################


* checking for file ‘cfTools/DESCRIPTION’ ... OK
* preparing ‘cfTools’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cfTools-vignette.Rmd’ using rmarkdown
Channels:
 - conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /home/biocbuild/.cache/R/basilisk/1.20.0/cfTools/1.8.0/new_env

  added / updated specs:
    - python=3.8


The following NEW packages will be INSTALLED:

  _openmp_mutex      conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu 
  bzip2              conda-forge/linux-aarch64::bzip2-1.0.8-h4777abc_8 
  ca-certificates    conda-forge/noarch::ca-certificates-2025.8.3-hbd8a1cb_0 
  ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.44-h9df1782_2 
  libffi             conda-forge/linux-aarch64::libffi-3.4.6-he21f813_1 
  libgcc             conda-forge/linux-aarch64::libgcc-15.1.0-he277a41_5 
  libgcc-ng          conda-forge/linux-aarch64::libgcc-ng-15.1.0-he9431aa_5 
  libgomp            conda-forge/linux-aarch64::libgomp-15.1.0-he277a41_5 
  liblzma            conda-forge/linux-aarch64::liblzma-5.8.1-h86ecc28_2 
  liblzma-devel      conda-forge/linux-aarch64::liblzma-devel-5.8.1-h86ecc28_2 
  libnsl             conda-forge/linux-aarch64::libnsl-2.0.1-h86ecc28_1 
  libsqlite          conda-forge/linux-aarch64::libsqlite-3.50.4-h022381a_0 
  libuuid            conda-forge/linux-aarch64::libuuid-2.41.2-h3e4203c_0 
  libxcrypt          conda-forge/linux-aarch64::libxcrypt-4.4.36-h31becfc_1 
  libzlib            conda-forge/linux-aarch64::libzlib-1.3.1-h86ecc28_2 
  ncurses            conda-forge/linux-aarch64::ncurses-6.5-ha32ae93_3 
  openssl            conda-forge/linux-aarch64::openssl-3.5.3-h8e36d6e_1 
  pip                conda-forge/noarch::pip-24.3.1-pyh8b19718_0 
  python             conda-forge/linux-aarch64::python-3.8.20-hbf90c55_2_cpython 
  readline           conda-forge/linux-aarch64::readline-8.2-h8382b9d_2 
  setuptools         conda-forge/noarch::setuptools-75.3.0-pyhd8ed1ab_0 
  tk                 conda-forge/linux-aarch64::tk-8.6.13-noxft_h5688188_102 
  wheel              conda-forge/noarch::wheel-0.45.1-pyhd8ed1ab_0 
  xz                 conda-forge/linux-aarch64::xz-5.8.1-h2dbfc1b_2 
  xz-gpl-tools       conda-forge/linux-aarch64::xz-gpl-tools-5.8.1-h2dbfc1b_2 
  xz-tools           conda-forge/linux-aarch64::xz-tools-5.8.1-h86ecc28_2 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.11.3
    latest version: 25.7.0

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed

PackagesNotFoundError: The following packages are not available from current channels:

  - tensorflow=2.10.0*

Current channels:

  - https://conda.anaconda.org/conda-forge

To search for alternate channels that may provide the conda package you're
looking for, navigate to

    https://anaconda.org

and use the search bar at the top of the page.



Quitting from cfTools-vignette.Rmd:164-167 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! one or more Python packages failed to install [error code 1]
---
Backtrace:
    ▆
 1. └─cfTools::MergePEReads(PEReads)
 2.   └─basilisk::basiliskStart(my_env)
 3.     └─basilisk::obtainEnvironmentPath(env)
 4.       └─basilisk::setupBasiliskEnv(...)
 5.         └─reticulate::conda_install(...)
 6.           └─reticulate:::stopf(fmt, result)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'cfTools-vignette.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building ‘cfTools-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘cfTools-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted