############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bugsigdbr ### ############################################################################## ############################################################################## * checking for file ‘bugsigdbr/DESCRIPTION’ ... OK * preparing ‘bugsigdbr’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘bugsigdbr.Rmd’ using rmarkdown Quitting from bugsigdbr.Rmd:234-237 [getUberon] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! download failed; see warnings() --- Backtrace: ▆ 1. └─bugsigdbr::getOntology("uberon") 2. └─bugsigdbr:::.getResourceFromCache(oname, FUN = .getonto) 3. ├─base::suppressWarnings(...) 4. │ └─base::withCallingHandlers(...) 5. ├─BiocFileCache::bfcdownload(bfc, rid, ask = FALSE, ...) 6. └─BiocFileCache::bfcdownload(bfc, rid, ask = FALSE, ...) 7. └─BiocFileCache:::.util_download_and_rename(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'bugsigdbr.Rmd' failed with diagnostics: download failed; see warnings() --- failed re-building ‘bugsigdbr.Rmd’ SUMMARY: processing the following file failed: ‘bugsigdbr.Rmd’ Error: Vignette re-building failed. Execution halted