############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data beadarray ### ############################################################################## ############################################################################## * checking for file ‘beadarray/DESCRIPTION’ ... OK * preparing ‘beadarray’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ImageProcessing.Rmd’ using rmarkdown --- finished re-building ‘ImageProcessing.Rmd’ --- re-building ‘beadarray.Rmd’ using rmarkdown --- finished re-building ‘beadarray.Rmd’ --- re-building ‘beadlevel.Rmd’ using rmarkdown --- finished re-building ‘beadlevel.Rmd’ --- re-building ‘beadsummary.Rmd’ using rmarkdown trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE33nnn/GSE33126/matrix/GSE33126_series_matrix.txt.gz' Content type 'application/x-gzip' length 3658664 bytes (3.5 MB) ================================================== downloaded 3.5 MB Quitting from beadsummary.Rmd:426-434 [unnamed-chunk-32] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'beadsummary.Rmd' failed with diagnostics: Failed to perform HTTP request. Caused by error in `curl::curl_fetch_memory()`: ! Failure when receiving data from the peer [www.ncbi.nlm.nih.gov]: Recv failure: Connection reset by peer --- failed re-building ‘beadsummary.Rmd’ SUMMARY: processing the following file failed: ‘beadsummary.Rmd’ Error: Vignette re-building failed. Execution halted