############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data SeqSQC ### ############################################################################## ############################################################################## * checking for file ‘SeqSQC/DESCRIPTION’ ... OK * preparing ‘SeqSQC’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘vignette.Rmd’ using rmarkdown Quitting from vignette.Rmd:214-216 [plot.pca.inter] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `pm[[2]]`: ! subscript out of bounds --- Backtrace: ▆ 1. └─SeqSQC::plotQC(seqfile, QCstep = "PCA", interactive = TRUE) 2. └─SeqSQC:::plotPop(res.qc, interactive = interactive, ...) 3. ├─plotly::ggplotly(p) 4. └─plotly:::ggplotly.ggplot(p) 5. └─plotly::gg2list(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'vignette.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘vignette.Rmd’ SUMMARY: processing the following file failed: ‘vignette.Rmd’ Error: Vignette re-building failed. Execution halted