############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 OmicsMLRepoR ### ############################################################################## ############################################################################## * checking for file ‘OmicsMLRepoR/DESCRIPTION’ ... OK * preparing ‘OmicsMLRepoR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Quickstart.Rmd’ using rmarkdown Quitting from Quickstart.Rmd:199-205 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! rowNodeLab should be provided. --- Backtrace: ▆ 1. ├─... %>% ... 2. └─curatedMetagenomicData::returnSamples(...) 3. ├─curatedMetagenomicData::mergeData(...) 4. └─curatedMetagenomicData::curatedMetagenomicData(...) 5. └─TreeSummarizedExperiment::TreeSummarizedExperiment(...) 6. └─TreeSummarizedExperiment:::.linkFun(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Quickstart.Rmd' failed with diagnostics: rowNodeLab should be provided. --- failed re-building ‘Quickstart.Rmd’ SUMMARY: processing the following file failed: ‘Quickstart.Rmd’ Error: Vignette re-building failed. Execution halted