############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Nebulosa ### ############################################################################## ############################################################################## * checking for file ‘Nebulosa/DESCRIPTION’ ... OK * preparing ‘Nebulosa’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘introduction.Rmd’ using rmarkdown 2025-12-18 21:27:54.422 R[74788:139357597] XType: com.apple.fonts is not accessible. 2025-12-18 21:27:54.423 R[74788:139357597] XType: XTFontStaticRegistry is enabled. --- finished re-building ‘introduction.Rmd’ --- re-building ‘nebulosa_seurat.Rmd’ using rmarkdown Using method 'umap' 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| Quitting from nebulosa_seurat.Rmd:127-129 [plot_cd4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'nebulosa_seurat.Rmd' failed with diagnostics: The `slot` argument of `FetchData()` was deprecated in SeuratObject 5.0.0 and is now defunct. ℹ Please use the `layer` argument instead. --- failed re-building ‘nebulosa_seurat.Rmd’ SUMMARY: processing the following file failed: ‘nebulosa_seurat.Rmd’ Error: Vignette re-building failed. Execution halted