############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MsBackendRawFileReader ### ############################################################################## ############################################################################## * checking for file ‘MsBackendRawFileReader/DESCRIPTION’ ... OK * preparing ‘MsBackendRawFileReader’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MsBackendRawFileReader.Rmd’ using rmarkdown sh: /Users/biocbuild/Library/Caches/org.R-project.R/R/rawrr/rawrrassembly/osx-x64/rawrr: Bad CPU type in executable sh: /Users/biocbuild/Library/Caches/org.R-project.R/R/rawrr/rawrrassembly/osx-x64/rawrr: Bad CPU type in executable sh: /Users/biocbuild/Library/Caches/org.R-project.R/R/rawrr/rawrrassembly/osx-x64/rawrr: Bad CPU type in executable Quitting from MsBackendRawFileReader.Rmd:103-107 [backendInitializeMsBackendRawFileReader] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! BiocParallel errors 3 remote errors, element index: 1, 2, 3 0 unevaluated and other errors first remote error: Error in if (rvs != "No RAW file specified!") {: argument is of length zero --- Backtrace: ▆ 1. ├─Spectra::backendInitialize(...) 2. └─Spectra::backendInitialize(...) 3. └─MsBackendRawFileReader (local) .local(object, ...) 4. ├─base::do.call(...) 5. ├─BiocParallel::bplapply(...) 6. └─BiocParallel::bplapply(...) 7. └─BiocParallel:::.bpinit(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MsBackendRawFileReader.Rmd' failed with diagnostics: BiocParallel errors 3 remote errors, element index: 1, 2, 3 0 unevaluated and other errors first remote error: Error in if (rvs != "No RAW file specified!") {: argument is of length zero --- failed re-building ‘MsBackendRawFileReader.Rmd’ SUMMARY: processing the following file failed: ‘MsBackendRawFileReader.Rmd’ Error: Vignette re-building failed. Execution halted