############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BindingSiteFinder ### ############################################################################## ############################################################################## * checking for file ‘BindingSiteFinder/DESCRIPTION’ ... OK * preparing ‘BindingSiteFinder’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘vignette.Rmd’ using rmarkdown Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Warning in hook_png(..., cmd = "optipng") : cannot find optipng; please install and put it in PATH Quitting from vignette.Rmd:363-365 [unnamed-chunk-28] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `+.gg`: ! 'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character' --- Backtrace: ▆ 1. └─BindingSiteFinder::reproducibilityScatterPlot(bdsOut) 2. └─GGally:::`+.gg`(...) 3. └─GGally:::add_list_to_ggmatrix(e1, e2) 4. └─GGally:::`+.gg`(e1, item) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'vignette.Rmd' failed with diagnostics: 'ggmatrix' does not know how to add objects that do not have class 'theme', 'labels' or 'ggproto'. Received object with class: 'character' --- failed re-building ‘vignette.Rmd’ SUMMARY: processing the following file failed: ‘vignette.Rmd’ Error: Vignette re-building failed. Execution halted