##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r SingscoreAMLMutations -R && F:\biocbuild\bbs-3.22-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data SingscoreAMLMutations
###
##############################################################################
##############################################################################


* checking for file 'SingscoreAMLMutations/DESCRIPTION' ... OK
* preparing 'SingscoreAMLMutations':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'workflow_transcriptional_mut_sig.Rmd' using rmarkdown

Quitting from workflow_transcriptional_mut_sig.Rmd:193-195 [gdc_prepare]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'workflow_transcriptional_mut_sig.Rmd' failed with diagnostics:
Can't select columns that don't exist.
✖ Column `disease_response` doesn't exist.
--- failed re-building 'workflow_transcriptional_mut_sig.Rmd'

--- re-building 'workflow_transcriptional_mut_sig_chinese.Rmd' using rmarkdown

Quitting from workflow_transcriptional_mut_sig_chinese.Rmd:190-192 [gdc_prepare]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'workflow_transcriptional_mut_sig_chinese.Rmd' failed with diagnostics:
Can't select columns that don't exist.
✖ Column `disease_response` doesn't exist.
--- failed re-building 'workflow_transcriptional_mut_sig_chinese.Rmd'

SUMMARY: processing the following files failed:
  'workflow_transcriptional_mut_sig.Rmd'
  'workflow_transcriptional_mut_sig_chinese.Rmd'

Error: Vignette re-building failed.
Execution halted