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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data qPLEXdata
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* checking for file ‘qPLEXdata/DESCRIPTION’ ... OK
* preparing ‘qPLEXdata’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘qPLEXdata.Rnw’ using knitr

Quitting from qPLEXdata.Rnw:54-74 [exp1_specificity]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! 'ER - IgG' is not a valid contrast. Available contrasts:
       ER_vs_IgG
---
Backtrace:
    x
 1. \-qPLEXanalyzer::getContrastResults(diffstats = diffstats, contrast = contrasts)
 2.   \-qPLEXanalyzer:::checkArg_getContrastResults(...)
 3.     \-assertthat::assert_that(is_validContrast(contrast, diffstats))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'qPLEXdata.Rnw' failed with diagnostics:
'ER - IgG' is not a valid contrast. Available contrasts:
       ER_vs_IgG
--- failed re-building ‘qPLEXdata.Rnw’

SUMMARY: processing the following file failed:
  ‘qPLEXdata.Rnw’

Error: Vignette re-building failed.
Execution halted