############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HiBED ### ############################################################################## ############################################################################## * checking for file ‘HiBED/DESCRIPTION’ ... OK * preparing ‘HiBED’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘HiBED.Rmd’ using rmarkdown Quitting from HiBED.Rmd:50-70 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `getManifest()`: ! cannot load manifest package IlluminaHumanMethylation450kmanifest --- Backtrace: ▆ 1. └─minfi::preprocessRaw(FlowSorted.DLPFC.450k) 2. └─minfi::getManifestInfo(rgSet, "locusNames") 3. └─minfi::getProbeInfo(object, type = "I") 4. ├─minfi::getManifest(object) 5. └─minfi::getManifest(object) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'HiBED.Rmd' failed with diagnostics: cannot load manifest package IlluminaHumanMethylation450kmanifest --- failed re-building ‘HiBED.Rmd’ SUMMARY: processing the following file failed: ‘HiBED.Rmd’ Error: Vignette re-building failed. Execution halted