############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data FlowSorted.Blood.EPIC ### ############################################################################## ############################################################################## * checking for file ‘FlowSorted.Blood.EPIC/DESCRIPTION’ ... OK * preparing ‘FlowSorted.Blood.EPIC’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘FlowSorted.Blood.EPIC.Rmd’ using rmarkdown Quitting from FlowSorted.Blood.EPIC.Rmd:78-131 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `getManifest()`: ! cannot load manifest package IlluminaHumanMethylationEPICmanifest --- Backtrace: ▆ 1. └─FlowSorted.Blood.EPIC::estimateCellCounts2(...) 2. └─minfi (local) processMethod(combinedRGset) 3. └─minfi::getOOB(rgSet) 4. └─minfi::getProbeInfo(object, type = "I-Red") 5. ├─minfi::getManifest(object) 6. └─minfi::getManifest(object) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'FlowSorted.Blood.EPIC.Rmd' failed with diagnostics: cannot load manifest package IlluminaHumanMethylationEPICmanifest --- failed re-building ‘FlowSorted.Blood.EPIC.Rmd’ SUMMARY: processing the following file failed: ‘FlowSorted.Blood.EPIC.Rmd’ Error: Vignette re-building failed. Execution halted